PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2z0hA_

Fold library id	PDB Header	Molecule	Title
c2z0hA_	PDB header: transferase	Chain: A: PDB Molecule: thymidylate kinase;	PDBTitle: crystal structure of thymidylate kinase in complex with dtdp2 and adp from thermotoga maritima

Links to external resources
Added to library: Tue Mar 16 14:03:17 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M F I T F E G I D G S G K S T Q I Q L L A Q Y L E K R G K V I L K R E P G G T E T G E K I R K I L L E E E V T P K A E L F L F L A S R N L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S
S S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V T E I K Q Y Y A V L L D R Y T D S S V A Y Q G F G R N L G K E I V E E L N D F A T D G L I P D L T F Y I D V D V E T A L K R K N R F E K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T T T T
S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . .

Sequence E F L E R V R E G Y L V L A R E H P E R I V V L D G K R S I E E I H R D V V R E V K R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	F	I	T	F	E	G	I	D	G	S	G	K	S	T	Q	I	Q	L	L	A	Q	Y	L	E	K	R	G	K	V	I	L	K	R	E	P	G	G	T	E	T	G	E	K	I	R	K	I	L	L	E	E	E	V	T	P	K	A	E	L	F	L	F	L	A	S	R	N	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	T	T	S	S																							S	S		S	S													S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	T	E	I	K	Q	Y	Y	A	V	L	L	D	R	Y	T	D	S	S	V	A	Y	Q	G	F	G	R	N	L	G	K	E	I	V	E	E	L	N	D	F	A	T	D	G	L	I	P	D	L	T	F	Y	I	D	V	D	V	E	T	A	L	K	R	K	N	R	F	E	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T								S									T	T	T	T	T		S														T	T				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Sequence	E	F	L	E	R	V	R	E	G	Y	L	V	L	A	R	E	H	P	E	R	I	V	V	L	D	G	K	R	S	I	E	E	I	H	R	D	V	V	R	E	V	K	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	T						T	T	S													T	T