PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3lv8A_

Fold library id	PDB Header	Molecule	Title
c3lv8A_	PDB header: transferase	Chain: A: PDB Molecule: thymidylate kinase;	PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate2 kinase (tmk) from vibrio cholerae o1 biovar eltor str.3 n16961 in complex with tmp, thymidine-5'-diphosphate and4 adp

Links to external resources
Added to library: Sat Aug 28 17:59:40 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N A K F I V I E G L E G A G K S T A I Q V V V E T L Q Q N G I D H I T R T R E P G G T L L A E K L R A L V K E E H P G E E L Q D I T E L L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
T T
S S
S S S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V Y A A R V Q L V E N V I K P A L A R G E W V V G D R H D M S S Q A Y Q G G G R Q I A P S T M Q S L K Q T A L G D F K P D L T L Y L D I D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
T T T T T
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . .

Sequence K L G L E R E L D R I E K M D I S F F E R A R E R Y L E L A N S D D S V V M I D A A Q S I E Q V T A D I R R A L Q D W L S Q V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S
T T T T S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	A	K	F	I	V	I	E	G	L	E	G	A	G	K	S	T	A	I	Q	V	V	V	E	T	L	Q	Q	N	G	I	D	H	I	T	R	T	R	E	P	G	G	T	L	L	A	E	K	L	R	A	L	V	K	E	E	H	P	G	E	E	L	Q	D	I	T	E	L	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	T	T	S																T	T									S	S		S	S												S			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	Y	A	A	R	V	Q	L	V	E	N	V	I	K	P	A	L	A	R	G	E	W	V	V	G	D	R	H	D	M	S	S	Q	A	Y	Q	G	G	G	R	Q	I	A	P	S	T	M	Q	S	L	K	Q	T	A	L	G	D	F	K	P	D	L	T	L	Y	L	D	I	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T							T	T							S									T	T	T	T	T																T	T				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Sequence	K	L	G	L	E	R	E	L	D	R	I	E	K	M	D	I	S	F	F	E	R	A	R	E	R	Y	L	E	L	A	N	S	D	D	S	V	V	M	I	D	A	A	Q	S	I	E	Q	V	T	A	D	I	R	R	A	L	Q	D	W	L	S	Q	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T	T	S																				T	T						T	T	S																		T	T