Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP52636
DateThu Jan 5 12:05:55 GMT 2012
Unique Job ID1e88f44bd382c1da

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1gx7A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase
Confidence and coverage
Confidence: 98.8% Coverage: 14%
51 residues ( 14% of your sequence) have been modelled with 98.8% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
122 residues ( 34%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETA
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Disorder  ???????????????????

?































??????
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   .........70.........80.........90.........100.........110.........120
Sequence  SSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCS
Secondary structure 

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Disorder 
?
?























































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   .........130.........140.........150.........160.........170.........180
Sequence  WLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYF
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???????????????


























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   .........190.........200.........210.........220.........230.........240
Sequence  MLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLS
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?
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   .........250.........260.........270.........280.........290.........300
Sequence  PFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQK
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Disorder 






?
?
















????????























?
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   .........310.........320.........330.........340.........350.......
Sequence  PAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
Secondary structure 

























SS confidence 
























































Disorder  ????????
?






















?

?











????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1gx7 chain A

3D model

Region: 244 - 295
Aligned: 51
Modelled: 52
Confidence: 98.8%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase

Phyre2

PDB 1kqf chain B

3D model

Region: 220 - 299
Aligned: 76
Modelled: 77
Confidence: 98.8%
Identity: 29%
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli

Phyre2

PDB 1gte chain A domain 5

3D model

Region: 224 - 307
Aligned: 83
Modelled: 84
Confidence: 98.8%
Identity: 27%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1hfe chain L

3D model

Region: 244 - 295
Aligned: 51
Modelled: 52
Confidence: 98.8%
Identity: 22%
PDB header:hydrogenase
Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1)
PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans

Phyre2

PDB 2fug chain G

3D model

Region: 247 - 297
Aligned: 50
Modelled: 51
Confidence: 98.8%
Identity: 32%
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus

Phyre2

PDB 2fug chain 9 domain 1

3D model

Region: 247 - 297
Aligned: 50
Modelled: 51
Confidence: 98.8%
Identity: 32%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 2c3y chain A

3D model

Region: 223 - 297
Aligned: 75
Modelled: 75
Confidence: 98.7%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus

Phyre2

PDB 1kqf chain B domain 1

3D model

Region: 223 - 297
Aligned: 71
Modelled: 75
Confidence: 98.7%
Identity: 32%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1gth chain D

3D model

Region: 238 - 301
Aligned: 64
Modelled: 64
Confidence: 98.7%
Identity: 25%
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil

Phyre2

PDB 1c4c chain A

3D model

Region: 244 - 297
Aligned: 53
Modelled: 54
Confidence: 98.7%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum

Phyre2

PDB 1xer chain A

3D model

Region: 244 - 297
Aligned: 53
Modelled: 54
Confidence: 98.6%
Identity: 28%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Archaeal ferredoxins

Phyre2

PDB 1dur chain A

3D model

Region: 246 - 297
Aligned: 51
Modelled: 52
Confidence: 98.6%
Identity: 29%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Short-chain ferredoxins

Phyre2

PDB 2fdn chain A

3D model

Region: 246 - 297
Aligned: 51
Modelled: 52
Confidence: 98.6%
Identity: 31%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Short-chain ferredoxins

Phyre2

PDB 2vpy chain B

3D model

Region: 223 - 300
Aligned: 72
Modelled: 78
Confidence: 98.6%
Identity: 31%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)

Phyre2

PDB 1vjw chain A

3D model

Region: 242 - 297
Aligned: 55
Modelled: 55
Confidence: 98.6%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Single 4Fe-4S cluster ferredoxin

Phyre2

PDB 1y5i chain B domain 1

3D model

Region: 223 - 351
Aligned: 115
Modelled: 129
Confidence: 98.6%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 1ti2 chain F

3D model

Region: 223 - 296
Aligned: 68
Modelled: 74
Confidence: 98.6%
Identity: 16%
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici

Phyre2

PDB 1iqz chain A

3D model

Region: 241 - 308
Aligned: 67
Modelled: 68
Confidence: 98.6%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Single 4Fe-4S cluster ferredoxin

Phyre2

PDB 1hfe chain L domain 2

3D model

Region: 244 - 297
Aligned: 53
Modelled: 54
Confidence: 98.6%
Identity: 21%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: Ferredoxin domains from multidomain proteins

Phyre2

PDB 7fd1 chain A

3D model

Region: 246 - 305
Aligned: 59
Modelled: 60
Confidence: 98.6%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: 4Fe-4S ferredoxins
Family: 7-Fe ferredoxin

Phyre2
1

c1gx7A_
2

c1kqfB_
3

d1gtea5
4

c1hfeL_
5

c2fugG_
6

d2fug91
7

c2c3yA_
8

d1kqfb1
9

c1gthD_
10

c1c4cA_
11

d1xera_
12

d1dura_
13

d2fdna_
14

c2vpyB_
15

d1vjwa_
16

d1y5ib1
17

c1ti2F_
18

d1iqza_
19

d1hfel2
20

d7fd1a_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1gx7A_



98.8 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase
2c1kqfB_



98.8 29 PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
3d1gtea5



98.8 27 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
4c1hfeL_



98.8 22 PDB header:hydrogenase
Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1)
PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans
5c2fugG_



98.8 32 PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
6d2fug91



98.8 32 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
7c2c3yA_



98.7 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
8d1kqfb1



98.7 32 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
9c1gthD_



98.7 25 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
10c1c4cA_



98.7 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
11d1xera_



98.6 28 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Archaeal ferredoxins
12d1dura_



98.6 29 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
13d2fdna_



98.6 31 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
14c2vpyB_



98.6 31 PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
15d1vjwa_



98.6 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
16d1y5ib1



98.6 20 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
17c1ti2F_



98.6 16 PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici
18d1iqza_



98.6 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
19d1hfel2



98.6 21 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
20d7fd1a_



98.6 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
21d1h0hb_



not modelled 98.6 17 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
22c2ivfB_



not modelled 98.6 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
23c3gyxJ_



not modelled 98.5 25 PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
24d1jnrb_



not modelled 98.5 25 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
25d1jb0c_



not modelled 98.5 31 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
26d1bc6a_



not modelled 98.5 27 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
27d1fcaa_



not modelled 98.5 29 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
28d3c8ya3



not modelled 98.4 25 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
29d1h98a_



not modelled 98.4 30 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
30c2gmhA_



not modelled 98.4 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
31d2fug34



not modelled 98.4 17 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
32d1sj1a_



not modelled 98.4 25 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
33c2zvsB_



not modelled 98.4 25 PDB header:electron transport
Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl;
PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli
34d1clfa_



not modelled 98.3 33 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
35c2fugC_



not modelled 98.3 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
36d1rgva_



not modelled 98.3 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
37d1blua_



not modelled 98.3 24 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
38d2c42a5



not modelled 98.3 28 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
39c2v2kB_



not modelled 98.2 24 PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin;
PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis
40d1vlfn2



not modelled 98.2 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
41c1dwlA_



not modelled 98.2 21 PDB header:electron transfer
Chain: A: PDB Molecule:ferredoxin i;
PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation
42c2fgoA_



not modelled 98.2 25 PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa
43d1fxra_



not modelled 98.1 23 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
44c3c7bE_



not modelled 98.0 24 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
45d2gmha3



not modelled 98.0 22 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:ETF-QO domain-like
46c2v4jE_



not modelled 98.0 24 PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
47c3c7bA_



not modelled 97.7 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
48c2v4jA_



not modelled 97.6 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
49d3c7bb1



not modelled 97.6 20 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
50d1nekb1



not modelled 97.5 31 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
51d1kf6b1



not modelled 97.5 31 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
52d2bs2b1



not modelled 97.5 24 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
53c1nekB_



not modelled 97.4 32 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
54c2h89B_



not modelled 97.4 29 PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
55c2b76N_



not modelled 97.4 29 PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
56c2bs2E_



not modelled 97.4 28 PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
57c3cf4A_



not modelled 97.3 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
58c3bk7A_



not modelled 97.3 22 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
59c2vdcI_



not modelled 95.7 36 PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
60d2v4ja1



not modelled 93.7 28 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
61d3c7ba1



not modelled 93.3 28 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
62d2v4jb1



not modelled 88.8 32 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
63d1gtea1



not modelled 67.9 32 Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Dihydropyrimidine dehydrogenase, N-terminal domain
64c2dtgE_



not modelled 66.5 24 PDB header:hormone receptor/immune system
Chain: E: PDB Molecule:insulin receptor;
PDBTitle: insulin receptor (ir) ectodomain in complex with fab's
65d1fxda_



not modelled 44.9 20 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
66c1g8jC_



not modelled 34.1 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:arsenite oxidase;
PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
67c1igrA_



not modelled 33.9 26 PDB header:hormone receptor
Chain: A: PDB Molecule:insulin-like growth factor receptor 1;
PDBTitle: type 1 insulin-like growth factor receptor (domains 1-3)
68c2hr7B_



not modelled 33.8 25 PDB header:transferase
Chain: B: PDB Molecule:insulin receptor;
PDBTitle: insulin receptor (domains 1-3)
69d3cx5c2



not modelled 31.3 25 Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
70c2fugA_



not modelled 25.3 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
71c2eoyA_



not modelled 24.9 46 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 473;
PDBTitle: solution structure of the c2h2 type zinc finger (region 557-2 589) of human zinc finger protein 473
72d1ofda2



not modelled 20.7 37 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
73c2l3kA_



not modelled 19.0 21 PDB header:oncoprotein
Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1;
PDBTitle: solution structure of lmo2(lim2)-ldb1(lid)
74d1ea0a2



not modelled 17.1 33 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
75c1x4lA_



not modelled 16.1 14 PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 3;
PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2
76c1moxB_



not modelled 15.5 24 PDB header:transferase/growth factor
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: crystal structure of human epidermal growth factor receptor (residues2 1-501) in complex with tgf-alpha
77c2l6yB_



not modelled 15.4 23 PDB header:transcription regulation/oncoprotein
Chain: B: PDB Molecule:lim domain only 2, linker, lim domain-binding protein 1;
PDBTitle: haddock model of gata1nf:lmo2lim2-ldb1lid
78d2dkta2



not modelled 15.2 30 Fold:Zinc hairpin stack
Superfamily:Zinc hairpin stack
Family:Zinc hairpin stack
79c1x64A_



not modelled 14.0 27 PDB header:contractile protein
Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein;
PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein
80c2co8A_



not modelled 13.8 18 PDB header:metal binding protein
Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology
PDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains
81c3mjhD_



not modelled 13.6 33 PDB header:protein transport
Chain: D: PDB Molecule:early endosome antigen 1;
PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1
82c2pmzS_



not modelled 13.5 24 PDB header:translation, transferase
Chain: S: PDB Molecule:dna-directed rna polymerase subunit d;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
83c2b5lC_



not modelled 13.3 33 PDB header:protein binding/viral protein
Chain: C: PDB Molecule:nonstructural protein v;
PDBTitle: crystal structure of ddb1 in complex with simian virus 5 v2 protein
84c2crcA_



not modelled 12.5 50 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin conjugating enzyme 7 interacting
PDBTitle: solution structure of the zf-ranbp domain of the protein2 hbv associated factor
85c1w1nA_



not modelled 11.8 36 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase tor1;
PDBTitle: the solution structure of the fatc domain of the protein2 kinase tor1 from yeast
86c1x62A_



not modelled 11.7 30 PDB header:structural protein
Chain: A: PDB Molecule:c-terminal lim domain protein 1;
PDBTitle: solution structure of the lim domain of carboxyl terminal2 lim domain protein 1
87d1wt8a1



not modelled 11.6 25 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
88c1zlgA_



not modelled 11.4 24 PDB header:hormone/growth factor
Chain: A: PDB Molecule:anosmin 1;
PDBTitle: solution structure of the extracellular matrix protein2 anosmin-1
89d1kbsa_



not modelled 11.4 45 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
90c1x68A_



not modelled 11.3 19 PDB header:protein binding
Chain: A: PDB Molecule:fhl5 protein;
PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein
91c1v06A_



not modelled 10.7 22 PDB header:dna-binding protein
Chain: A: PDB Molecule:hmg box-containing protein 1;
PDBTitle: axh domain of the transcription factor hbp1 from m.musculus
92c3qntA_



not modelled 10.6 45 PDB header:transport protein
Chain: A: PDB Molecule:niemann-pick c1-like protein 1;
PDBTitle: npc1l1 (ntd) structure
93c1m6bA_



not modelled 10.1 26 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:receptor protein-tyrosine kinase erbb-3;
PDBTitle: structure of the her3 (erbb3) extracellular domain
94c1x63A_



not modelled 9.6 22 PDB header:contractile protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 1;
PDBTitle: solution structure of the second lim domain of skeletal2 muscle lim protein 1
95c2a91A_



not modelled 9.6 23 PDB header:signaling protein,transferase,membrane p
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: crystal structure of erbb2 domains 1-3
96c2x9qA_



not modelled 9.3 11 PDB header:ligase
Chain: A: PDB Molecule:cyclodipeptide synthetase;
PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases.
97d1djqa3



not modelled 9.0 36 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:N-terminal domain of adrenodoxin reductase-like
98c3gczA_



not modelled 8.8 31 PDB header:transferase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: yokose virus methyltransferase in complex with adomet
99c3u5ga_



not modelled 8.7 22 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0