Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	E	N	K	R	T	R	W	Q	R	R	P	G	T	T	G	G	K	L	P	W	N	D	W	R	N	A	T	T	W	R	K	A	T	Q	L	L	L	L	A	M	N	I	Y	I	A	I	T	F	W	Y	W	V	R	Y	Y	E	T	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?			?																																	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	S	T	T	F	V	A	R	P	G	G	I	E	G	W	L	P	I	A	G	L	M	N	L	K	Y	S	L	V	T	G	Q	L	P	S	V	H	A	A	A	M	L	L	L	V	A	F	I	V	I	S	L	L	L	K	K	A	F	C	S
Secondary structure
SS confidence
Disorder			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		W	L	C	P	V	G	T	L	S	E	L	I	G	D	L	G	N	K	L	F	G	R	Q	C	V	L	P	R	W	L	D	I	P	L	R	G	V	K	Y	L	L	L	S	F	F	I	Y	I	A	L	L	M	P	A	Q	A	I	H	Y	F
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	L	S	P	Y	S	V	V	M	D	V	K	M	L	D	F	F	R	H	M	G	T	A	T	L	I	S	V	T	V	L	L	I	A	S	L	F	I	R	H	A	W	C	R	Y	L	C	P	Y	G	A	L	M	G	V	V	S	L	L	S
Secondary structure
SS confidence
Disorder																																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	F	K	I	R	R	N	A	E	S	C	I	D	C	G	K	C	A	K	N	C	P	S	R	I	P	V	D	K	L	I	Q	V	R	T	V	E	C	T	G	C	M	T	C	V	E	S	C	P	V	A	S	T	L	T	F	S	L	Q	K
Secondary structure
SS confidence
Disorder									?		?																		?	?	?	?	?	?	?	?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Sequence		P	A	A	N	K	K	A	F	A	L	S	G	W	L	M	T	L	L	V	L	G	I	M	F	A	V	I	G	Y	A	M	Y	A	G	V	W	Q	S	P	V	P	E	E	L	Y	R	R	L	I	P	Q	A	P	M	I	G	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?		?																								?			?													?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gx7 chain A Region: 244 - 295 Aligned: 51 Modelled: 52 Confidence: 98.8% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase Phyre2 PDB 1kqf chain B Region: 220 - 299 Aligned: 76 Modelled: 77 Confidence: 98.8% Identity: 29% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1gte chain A domain 5 Region: 224 - 307 Aligned: 83 Modelled: 84 Confidence: 98.8% Identity: 27% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1hfe chain L Region: 244 - 295 Aligned: 51 Modelled: 52 Confidence: 98.8% Identity: 22% PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans Phyre2 PDB 2fug chain G Region: 247 - 297 Aligned: 50 Modelled: 51 Confidence: 98.8% Identity: 32% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 2fug chain 9 domain 1 Region: 247 - 297 Aligned: 50 Modelled: 51 Confidence: 98.8% Identity: 32% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2c3y chain A Region: 223 - 297 Aligned: 75 Modelled: 75 Confidence: 98.7% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus Phyre2 PDB 1kqf chain B domain 1 Region: 223 - 297 Aligned: 71 Modelled: 75 Confidence: 98.7% Identity: 32% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1gth chain D Region: 238 - 301 Aligned: 64 Modelled: 64 Confidence: 98.7% Identity: 25% PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Phyre2 PDB 1c4c chain A Region: 244 - 297 Aligned: 53 Modelled: 54 Confidence: 98.7% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum Phyre2 PDB 1xer chain A Region: 244 - 297 Aligned: 53 Modelled: 54 Confidence: 98.6% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Archaeal ferredoxins Phyre2 PDB 1dur chain A Region: 246 - 297 Aligned: 51 Modelled: 52 Confidence: 98.6% Identity: 29% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 2fdn chain A Region: 246 - 297 Aligned: 51 Modelled: 52 Confidence: 98.6% Identity: 31% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 2vpy chain B Region: 223 - 300 Aligned: 72 Modelled: 78 Confidence: 98.6% Identity: 31% PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) Phyre2 PDB 1vjw chain A Region: 242 - 297 Aligned: 55 Modelled: 55 Confidence: 98.6% Identity: 24% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Single 4Fe-4S cluster ferredoxin Phyre2 PDB 1y5i chain B domain 1 Region: 223 - 351 Aligned: 115 Modelled: 129 Confidence: 98.6% Identity: 20% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1ti2 chain F Region: 223 - 296 Aligned: 68 Modelled: 74 Confidence: 98.6% Identity: 16% PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici Phyre2 PDB 1iqz chain A Region: 241 - 308 Aligned: 67 Modelled: 68 Confidence: 98.6% Identity: 24% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Single 4Fe-4S cluster ferredoxin Phyre2 PDB 1hfe chain L domain 2 Region: 244 - 297 Aligned: 53 Modelled: 54 Confidence: 98.6% Identity: 21% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 7fd1 chain A Region: 246 - 305 Aligned: 59 Modelled: 60 Confidence: 98.6% Identity: 24% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 1 c1gx7A_ 2 c1kqfB_ 3 d1gtea5 4 c1hfeL_ 5 c2fugG_ 6 d2fug91 7 c2c3yA_ 8 d1kqfb1 9 c1gthD_ 10 c1c4cA_ 11 d1xera_ 12 d1dura_ 13 d2fdna_ 14 c2vpyB_ 15 d1vjwa_ 16 d1y5ib1 17 c1ti2F_ 18 d1iqza_ 19 d1hfel2 20 d7fd1a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1gx7A_ 98.8 22 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 2 c1kqfB_ 98.8 29 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 3 d1gtea5 98.8 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 4 c1hfeL_ 98.8 22 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 5 c2fugG_ 98.8 32 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 6 d2fug91 98.8 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 7 c2c3yA_ 98.7 29 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 8 d1kqfb1 98.7 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 9 c1gthD_ 98.7 25 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 10 c1c4cA_ 98.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 11 d1xera_ 98.6 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 12 d1dura_ 98.6 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 13 d2fdna_ 98.6 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 14 c2vpyB_ 98.6 31 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 15 d1vjwa_ 98.6 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 16 d1y5ib1 98.6 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 17 c1ti2F_ 98.6 16 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 18 d1iqza_ 98.6 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 19 d1hfel2 98.6 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 20 d7fd1a_ 98.6 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 21 d1h0hb_ not modelled 98.6 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 22 c2ivfB_ not modelled 98.6 22 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 23 c3gyxJ_ not modelled 98.5 25 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 24 d1jnrb_ not modelled 98.5 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 25 d1jb0c_ not modelled 98.5 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 26 d1bc6a_ not modelled 98.5 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 27 d1fcaa_ not modelled 98.5 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 28 d3c8ya3 not modelled 98.4 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 29 d1h98a_ not modelled 98.4 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 30 c2gmhA_ not modelled 98.4 22 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 31 d2fug34 not modelled 98.4 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 32 d1sj1a_ not modelled 98.4 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 33 c2zvsB_ not modelled 98.4 25 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 34 d1clfa_ not modelled 98.3 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 35 c2fugC_ not modelled 98.3 20 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 36 d1rgva_ not modelled 98.3 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 37 d1blua_ not modelled 98.3 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 38 d2c42a5 not modelled 98.3 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 39 c2v2kB_ not modelled 98.2 24 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 40 d1vlfn2 not modelled 98.2 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 41 c1dwlA_ not modelled 98.2 21 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 42 c2fgoA_ not modelled 98.2 25 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 43 d1fxra_ not modelled 98.1 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 44 c3c7bE_ not modelled 98.0 24 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 45 d2gmha3 not modelled 98.0 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 46 c2v4jE_ not modelled 98.0 24 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 47 c3c7bA_ not modelled 97.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 48 c2v4jA_ not modelled 97.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 49 d3c7bb1 not modelled 97.6 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 50 d1nekb1 not modelled 97.5 31 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 51 d1kf6b1 not modelled 97.5 31 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 52 d2bs2b1 not modelled 97.5 24 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 53 c1nekB_ not modelled 97.4 32 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 54 c2h89B_ not modelled 97.4 29 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 55 c2b76N_ not modelled 97.4 29 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 56 c2bs2E_ not modelled 97.4 28 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 57 c3cf4A_ not modelled 97.3 34 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 58 c3bk7A_ not modelled 97.3 22 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 59 c2vdcI_ not modelled 95.7 36 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 60 d2v4ja1 not modelled 93.7 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 61 d3c7ba1 not modelled 93.3 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 62 d2v4jb1 not modelled 88.8 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 63 d1gtea1 not modelled 67.9 32 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 64 c2dtgE_ not modelled 66.5 24 PDB header:hormone receptor/immune system Chain: E: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (ir) ectodomain in complex with fab's 65 d1fxda_ not modelled 44.9 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 66 c1g8jC_ not modelled 34.1 16 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 67 c1igrA_ not modelled 33.9 26 PDB header:hormone receptor Chain: A: PDB Molecule:insulin-like growth factor receptor 1; PDBTitle: type 1 insulin-like growth factor receptor (domains 1-3) 68 c2hr7B_ not modelled 33.8 25 PDB header:transferase Chain: B: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (domains 1-3) 69 d3cx5c2 not modelled 31.3 25 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 70 c2fugA_ not modelled 25.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 71 c2eoyA_ not modelled 24.9 46 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 557-2 589) of human zinc finger protein 473 72 d1ofda2 not modelled 20.7 37 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 73 c2l3kA_ not modelled 19.0 21 PDB header:oncoprotein Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1; PDBTitle: solution structure of lmo2(lim2)-ldb1(lid) 74 d1ea0a2 not modelled 17.1 33 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 75 c1x4lA_ not modelled 16.1 14 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2 76 c1moxB_ not modelled 15.5 24 PDB header:transferase/growth factor Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: crystal structure of human epidermal growth factor receptor (residues2 1-501) in complex with tgf-alpha 77 c2l6yB_ not modelled 15.4 23 PDB header:transcription regulation/oncoprotein Chain: B: PDB Molecule:lim domain only 2, linker, lim domain-binding protein 1; PDBTitle: haddock model of gata1nf:lmo2lim2-ldb1lid 78 d2dkta2 not modelled 15.2 30 Fold:Zinc hairpin stack Superfamily:Zinc hairpin stack Family:Zinc hairpin stack 79 c1x64A_ not modelled 14.0 27 PDB header:contractile protein Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein; PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein 80 c2co8A_ not modelled 13.8 18 PDB header:metal binding protein Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains 81 c3mjhD_ not modelled 13.6 33 PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1 82 c2pmzS_ not modelled 13.5 24 PDB header:translation, transferase Chain: S: PDB Molecule:dna-directed rna polymerase subunit d; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 83 c2b5lC_ not modelled 13.3 33 PDB header:protein binding/viral protein Chain: C: PDB Molecule:nonstructural protein v; PDBTitle: crystal structure of ddb1 in complex with simian virus 5 v2 protein 84 c2crcA_ not modelled 12.5 50 PDB header:ligase Chain: A: PDB Molecule:ubiquitin conjugating enzyme 7 interacting PDBTitle: solution structure of the zf-ranbp domain of the protein2 hbv associated factor 85 c1w1nA_ not modelled 11.8 36 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol 3-kinase tor1; PDBTitle: the solution structure of the fatc domain of the protein2 kinase tor1 from yeast 86 c1x62A_ not modelled 11.7 30 PDB header:structural protein Chain: A: PDB Molecule:c-terminal lim domain protein 1; PDBTitle: solution structure of the lim domain of carboxyl terminal2 lim domain protein 1 87 d1wt8a1 not modelled 11.6 25 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 88 c1zlgA_ not modelled 11.4 24 PDB header:hormone/growth factor Chain: A: PDB Molecule:anosmin 1; PDBTitle: solution structure of the extracellular matrix protein2 anosmin-1 89 d1kbsa_ not modelled 11.4 45 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 90 c1x68A_ not modelled 11.3 19 PDB header:protein binding Chain: A: PDB Molecule:fhl5 protein; PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein 91 c1v06A_ not modelled 10.7 22 PDB header:dna-binding protein Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: axh domain of the transcription factor hbp1 from m.musculus 92 c3qntA_ not modelled 10.6 45 PDB header:transport protein Chain: A: PDB Molecule:niemann-pick c1-like protein 1; PDBTitle: npc1l1 (ntd) structure 93 c1m6bA_ not modelled 10.1 26 PDB header:signaling protein, transferase Chain: A: PDB Molecule:receptor protein-tyrosine kinase erbb-3; PDBTitle: structure of the her3 (erbb3) extracellular domain 94 c1x63A_ not modelled 9.6 22 PDB header:contractile protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of the second lim domain of skeletal2 muscle lim protein 1 95 c2a91A_ not modelled 9.6 23 PDB header:signaling protein,transferase,membrane p Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: crystal structure of erbb2 domains 1-3 96 c2x9qA_ not modelled 9.3 11 PDB header:ligase Chain: A: PDB Molecule:cyclodipeptide synthetase; PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases. 97 d1djqa3 not modelled 9.0 36 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 98 c3gczA_ not modelled 8.8 31 PDB header:transferase Chain: A: PDB Molecule:polyprotein; PDBTitle: yokose virus methyltransferase in complex with adomet 99 c3u5ga_ not modelled 8.7 22 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0