Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionO94669
DateSun Jul 8 11:54:00 BST 2012
Unique Job ID9ab4a24c790e374c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1w63P_
Top template information
PDB header:endocytosis
Chain: P: PDB Molecule:adaptor-related protein complex 1, mu 1 subunit;
PDBTitle: ap1 clathrin adaptor core
Confidence and coverage
Confidence:100.0% Coverage: 90%
384 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSTIEAIYLVDTNGALLLQLESRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIF
Secondary structure 
SS confidence 
Disorder  ????
???
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  QELEEDVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMI
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  DYGYATCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFI
Secondary structure 
SS confidence 
Disorder 
????????????????????????????????
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  HVLERVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLSLRPGTKLGNVRFHQSVNLKR
Secondary structure 
SS confidence 
Disorder 
?
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  WKQHPDQIEFIPPDGKFTLASFQTDFATQKSLPVVVEAKNKLDGRFEVRIRNTGKKSVEN
Secondary structure 
SS confidence 
Disorder  ???
??
????
?
???
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LKILITIPQALKSVTVTEGNYIFRASKYTHMEEGILEWSVKKLAWTSPALVLTGFLAPLK
Secondary structure 
SS confidence 
Disorder 
?
?????????
?
?
????????????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  KDANSTEESSSYSKLEHLDLQYKLQGSTLHNFKVESLKMLNHPDKKSYKGVKHTIIAQNV
Secondary structure 
SS confidence 
Disorder  ?????????????
?????
Disorder confidence 
 
   .....
Sequence  SFRFR
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1w63 chain P

3D model

Region: 3 - 425
Aligned: 384
Modelled: 390
Confidence: 100.0%
Identity: 23%
PDB header:endocytosis
Chain: P: PDB Molecule:adaptor-related protein complex 1, mu 1 subunit;
PDBTitle: ap1 clathrin adaptor core

Phyre2

PDB 2jkr chain M

3D model

Region: 4 - 423
Aligned: 387
Modelled: 402
Confidence: 100.0%
Identity: 21%
PDB header:endocytosis
Chain: M: PDB Molecule:ap-2 complex subunit mu-1;
PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse

Phyre2

PDB 1bw8 chain A

3D model

Region: 164 - 423
Aligned: 243
Modelled: 253
Confidence: 100.0%
Identity: 23%
PDB header:peptide binding protein
Chain: A: PDB Molecule:protein (mu2 adaptin subunit);
PDBTitle: mu2 adaptin subunit (ap50) of ap2 adaptor (second domain),2 complexed with egfr internalization peptide fyralm

Phyre2

PDB 4en2 chain M

3D model

Region: 165 - 425
Aligned: 239
Modelled: 244
Confidence: 100.0%
Identity: 26%
PDB header:viral protein/immune system
Chain: M: PDB Molecule:ap-1 complex subunit mu-1;
PDBTitle: hiv-1 nef in complex with mhc-i cytoplasmic domain and mu1 adaptin2 subunit of ap1 adaptor (second domain)

Phyre2

PDB 2pr9 chain A domain 1

3D model

Region: 164 - 423
Aligned: 242
Modelled: 253
Confidence: 100.0%
Identity: 24%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
Family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor

Phyre2

PDB 3ml6 chain D

3D model

Region: 174 - 423
Aligned: 221
Modelled: 244
Confidence: 100.0%
Identity: 23%
PDB header:protein transport
Chain: D: PDB Molecule:chimeric complex between protein dishevlled2 homolog dvl-2
PDBTitle: a complex between dishevlled2 and clathrin adaptor ap-2

Phyre2

PDB 3l81 chain A

3D model

Region: 176 - 424
Aligned: 229
Modelled: 249
Confidence: 100.0%
Identity: 24%
PDB header:transport protein
Chain: A: PDB Molecule:ap-4 complex subunit mu-1;
PDBTitle: crystal structure of adaptor protein complex 4 (ap-4) mu4 subunit c-2 terminal domain, in complex with a sorting peptide from the amyloid3 precursor protein (app)

Phyre2

PDB 1gw5 chain M domain 2

3D model

Region: 4 - 145
Aligned: 140
Modelled: 142
Confidence: 100.0%
Identity: 17%
Fold: Profilin-like
Superfamily: SNARE-like
Family: Clathrin coat assembly domain

Phyre2

PDB 2hf6 chain A

3D model

Region: 1 - 140
Aligned: 138
Modelled: 140
Confidence: 100.0%
Identity: 14%
PDB header:protein transport
Chain: A: PDB Molecule:coatomer subunit zeta-1;
PDBTitle: solution structure of human zeta-cop

Phyre2

PDB 1gw5 chain S

3D model

Region: 4 - 143
Aligned: 140
Modelled: 140
Confidence: 100.0%
Identity: 16%
Fold: Profilin-like
Superfamily: SNARE-like
Family: Clathrin coat assembly domain

Phyre2

PDB 1w63 chain T

3D model

Region: 4 - 137
Aligned: 134
Modelled: 134
Confidence: 100.0%
Identity: 13%
PDB header:endocytosis
Chain: T: PDB Molecule:adapter-related protein complex 1 sigma 1a
PDBTitle: ap1 clathrin adaptor core

Phyre2

PDB 3g9h chain A

3D model

Region: 181 - 421
Aligned: 218
Modelled: 231
Confidence: 99.1%
Identity: 17%
PDB header:endocytosis
Chain: A: PDB Molecule:suppressor of yeast profilin deletion;
PDBTitle: crystal structure of the c-terminal mu homology domain of2 syp1

Phyre2

PDB 3cue chain M

3D model

Region: 3 - 96
Aligned: 94
Modelled: 94
Confidence: 96.0%
Identity: 13%
PDB header:protein transport
Chain: M: PDB Molecule:transport protein particle 23 kda subunit;
PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p

Phyre2

PDB 1sko chain A

3D model

Region: 4 - 95
Aligned: 91
Modelled: 92
Confidence: 95.9%
Identity: 9%
PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex

Phyre2

PDB 2dmw chain A

3D model

Region: 1 - 98
Aligned: 91
Modelled: 98
Confidence: 95.3%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:synaptobrevin-like 1 variant;
PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1

Phyre2

PDB 4afi chain B

3D model

Region: 1 - 99
Aligned: 92
Modelled: 99
Confidence: 95.2%
Identity: 12%
PDB header:endocytosis
Chain: B: PDB Molecule:ap-3 complex subunit delta-1, vesicle-associated membrane
PDBTitle: complex between vamp7 longin domain and fragment of delta-2 adaptin from ap3

Phyre2

PDB 3cue chain O

3D model

Region: 3 - 96
Aligned: 91
Modelled: 94
Confidence: 94.9%
Identity: 11%
PDB header:protein transport
Chain: O: PDB Molecule:transport protein particle 18 kda subunit;
PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p

Phyre2

PDB 3cpt chain A domain 1

3D model

Region: 4 - 95
Aligned: 92
Modelled: 92
Confidence: 94.9%
Identity: 8%
Fold: Profilin-like
Superfamily: Roadblock/LC7 domain
Family: Roadblock/LC7 domain

Phyre2

PDB 2j3t chain C

3D model

Region: 3 - 96
Aligned: 92
Modelled: 94
Confidence: 94.8%
Identity: 17%
PDB header:transport
Chain: C: PDB Molecule:trafficking protein particle complex subunit 1;
PDBTitle: the crystal structure of the bet3-trs33-bet5-trs23 complex.

Phyre2

PDB 3kyq chain A

3D model

Region: 1 - 99
Aligned: 99
Modelled: 99
Confidence: 94.0%
Identity: 7%
PDB header:transferase
Chain: A: PDB Molecule:synaptobrevin homolog ykt6;
PDBTitle: lipid-induced conformational switch controls fusion activity of longin2 domain snare ykt6

Phyre2
1
c1w63P_
2
c2jkrM_
3
c1bw8A_
4
c4en2M_
5
d2pr9a1
6
c3ml6D_
7
c3l81A_
8
d1gw5m2
9
c2hf6A_
10
d1gw5s_
11
c1w63T_
12
c3g9hA_
13
c3cueM_
14
c1skoA_
15
c2dmwA_
16
c4afiB_
17
c3cueO_
18
d3cpta1
19
c2j3tC_
20
c3kyqA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
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46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
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89



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1w63P_
100.0 23 PDB header:endocytosis
Chain: P: PDB Molecule:adaptor-related protein complex 1, mu 1 subunit;
PDBTitle: ap1 clathrin adaptor core
2c2jkrM_
100.0 21 PDB header:endocytosis
Chain: M: PDB Molecule:ap-2 complex subunit mu-1;
PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse
3c1bw8A_
100.0 23 PDB header:peptide binding protein
Chain: A: PDB Molecule:protein (mu2 adaptin subunit);
PDBTitle: mu2 adaptin subunit (ap50) of ap2 adaptor (second domain),2 complexed with egfr internalization peptide fyralm
4c4en2M_
100.0 26 PDB header:viral protein/immune system
Chain: M: PDB Molecule:ap-1 complex subunit mu-1;
PDBTitle: hiv-1 nef in complex with mhc-i cytoplasmic domain and mu1 adaptin2 subunit of ap1 adaptor (second domain)
5d2pr9a1
100.0 24 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
Family:Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
6c3ml6D_
100.0 23 PDB header:protein transport
Chain: D: PDB Molecule:chimeric complex between protein dishevlled2 homolog dvl-2
PDBTitle: a complex between dishevlled2 and clathrin adaptor ap-2
7c3l81A_
100.0 24 PDB header:transport protein
Chain: A: PDB Molecule:ap-4 complex subunit mu-1;
PDBTitle: crystal structure of adaptor protein complex 4 (ap-4) mu4 subunit c-2 terminal domain, in complex with a sorting peptide from the amyloid3 precursor protein (app)
8d1gw5m2
100.0 17 Fold:Profilin-like
Superfamily:SNARE-like
Family:Clathrin coat assembly domain
9c2hf6A_
100.0 14 PDB header:protein transport
Chain: A: PDB Molecule:coatomer subunit zeta-1;
PDBTitle: solution structure of human zeta-cop
10d1gw5s_
100.0 16 Fold:Profilin-like
Superfamily:SNARE-like
Family:Clathrin coat assembly domain
11c1w63T_
100.0 13 PDB header:endocytosis
Chain: T: PDB Molecule:adapter-related protein complex 1 sigma 1a
PDBTitle: ap1 clathrin adaptor core
12c3g9hA_
99.1 17 PDB header:endocytosis
Chain: A: PDB Molecule:suppressor of yeast profilin deletion;
PDBTitle: crystal structure of the c-terminal mu homology domain of2 syp1
13c3cueM_
96.0 13 PDB header:protein transport
Chain: M: PDB Molecule:transport protein particle 23 kda subunit;
PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p
14c1skoA_
95.9 9 PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
15c2dmwA_
95.3 15 PDB header:membrane protein
Chain: A: PDB Molecule:synaptobrevin-like 1 variant;
PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1
16c4afiB_
95.2 12 PDB header:endocytosis
Chain: B: PDB Molecule:ap-3 complex subunit delta-1, vesicle-associated membrane
PDBTitle: complex between vamp7 longin domain and fragment of delta-2 adaptin from ap3
17c3cueO_
94.9 11 PDB header:protein transport
Chain: O: PDB Molecule:transport protein particle 18 kda subunit;
PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p
18d3cpta1
94.9 8 Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
19c2j3tC_
94.8 17 PDB header:transport
Chain: C: PDB Molecule:trafficking protein particle complex subunit 1;
PDBTitle: the crystal structure of the bet3-trs33-bet5-trs23 complex.
20c3kyqA_
94.0 7 PDB header:transferase
Chain: A: PDB Molecule:synaptobrevin homolog ykt6;
PDBTitle: lipid-induced conformational switch controls fusion activity of longin2 domain snare ykt6
21d1ioua_
not modelled 93.3 15 Fold:Profilin-like
Superfamily:SNARE-like
Family:Synatpobrevin N-terminal domain
22c3egdC_
not modelled 90.8 11 PDB header:protein transport
Chain: C: PDB Molecule:vesicle-trafficking protein sec22b;
PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22 and bound3 to the transport signal sequence of vesicular stomatitis4 virus glycoprotein
23c2nupC_
not modelled 90.8 11 PDB header:protein transport
Chain: C: PDB Molecule:vesicle-trafficking protein sec22b;
PDBTitle: crystal structure of the human sec23a/24a heterodimer,2 complexed with the snare protein sec22b
24c2vx8D_
not modelled 90.3 13 PDB header:endocytosis,exocytosis
Chain: D: PDB Molecule:nucleoporin-like protein rip, vesicle-associated
PDBTitle: vamp7 longin domain hrb peptide complex
25d1ifqa_
not modelled 88.8 12 Fold:Profilin-like
Superfamily:SNARE-like
Family:Synatpobrevin N-terminal domain
26c2zmvB_
not modelled 83.1 18 PDB header:transport protein
Chain: B: PDB Molecule:trafficking protein particle complex subunit 4;
PDBTitle: crystal structure of synbindin
27d2j3wa1
not modelled 80.3 10 Fold:Profilin-like
Superfamily:SNARE-like
Family:Sedlin (SEDL)
28d2fh5a1
not modelled 56.9 6 Fold:Profilin-like
Superfamily:SNARE-like
Family:SRP alpha N-terminal domain-like
29c2go51_
not modelled 55.6 7 PDB header:translation/rna
Chain: 1: PDB Molecule:signal recognition particle receptor alpha
PDBTitle: structure of signal recognition particle receptor (sr) in2 complex with signal recognition particle (srp) and3 ribosome nascent chain complex
30c2pnyA_
not modelled 37.3 27 PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2;
PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2
31d3buxb3
not modelled 30.3 23 Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
32c2wl8D_
not modelled 30.3 14 PDB header:protein transport
Chain: D: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: x-ray crystal structure of pex19p
33c3npkB_
not modelled 25.8 14 PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: the crystal structure of geranyltranstransferase from campylobacter2 jejuni
34c1r77A_
not modelled 25.6 6 PDB header:hydrolase
Chain: A: PDB Molecule:cell wall targeting domain of glycylglycine
PDBTitle: crystal structure of the cell wall targeting domain of2 peptidylglycan hydrolase ale-1
35c2i6kA_
not modelled 22.9 40 PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1;
PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog
36d2zcta1
not modelled 18.1 18 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
37c3op0B_
not modelled 17.4 15 PDB header:signaling protein/signaling protein regu
Chain: B: PDB Molecule:signal transduction protein cbl-c;
PDBTitle: crystal structure of cbl-c (cbl-3) tkb domain in complex with egfr2 py1069 peptide
38d1k4na_
not modelled 15.1 22 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Hypothetical protein YecM (EC4020)
39c2v2gC_
not modelled 15.0 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxiredoxin 6;
PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form
40d1prxa_
not modelled 13.2 15 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
41d1hzta_
not modelled 13.0 20 Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
42c2wxoA_
not modelled 12.6 15 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: the crystal structure of the murine class ia pi 3-kinase2 p110delta in complex with as5.
43d1xcca_
not modelled 12.0 9 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
44d1vetb_
not modelled 11.9 13 Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
45d2cv4a1
not modelled 11.9 17 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
46c2l0rA_
not modelled 11.7 17 PDB header:hydrolase,toxin
Chain: A: PDB Molecule:lethal factor;
PDBTitle: conformational dynamics of the anthrax lethal factor catalytic center
47d1e7ua4
not modelled 11.2 12 Fold:Protein kinase-like (PK-like)
Superfamily:Protein kinase-like (PK-like)
Family:Phoshoinositide 3-kinase (PI3K), catalytic domain
48d2fi0a1
not modelled 11.2 13 Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
49c1e8zA_
not modelled 10.6 12 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase catalytic subunit;
PDBTitle: structure determinants of phosphoinositide 3-kinase2 inhibition by wortmannin, ly294002, quercetin, myricetin3 and staurosporine
50d1qmva_
not modelled 10.4 12 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
51d1n8va_
not modelled 9.9 15 Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2
52c3e6qL_
not modelled 9.7 19 PDB header:isomerase
Chain: L: PDB Molecule:putative 5-carboxymethyl-2-hydroxymuconate isomerase;
PDBTitle: putative 5-carboxymethyl-2-hydroxymuconate isomerase from pseudomonas2 aeruginosa.
53c2rd0A_
not modelled 9.4 12 PDB header:transferase/oncoprotein
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: structure of a human p110alpha/p85alpha complex
54d1mqea_
not modelled 9.4 29 Fold:Nudix
Superfamily:Nudix
Family:MutT-like
55d1uula_
not modelled 9.0 9 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
56c1n4kA_
not modelled 9.0 10 PDB header:membrane protein
Chain: A: PDB Molecule:inositol 1,4,5-trisphosphate receptor type 1;
PDBTitle: crystal structure of the inositol 1,4,5-trisphosphate2 receptor binding core in complex with ip3
57d1so9a_
not modelled 8.5 6 Fold:Ctag/Cox11
Superfamily:Ctag/Cox11
Family:Ctag/Cox11
58c1so9A_
not modelled 8.5 6 PDB header:metal transport
Chain: A: PDB Molecule:cytochrome c oxidase assembly protein ctag;
PDBTitle: solution structure of apocox11, 30 structures
59d1w5ra1
not modelled 8.2 13 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
60d2aeea1
not modelled 7.9 18 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
61d1iyjb2
not modelled 7.8 22 Fold:BRCA2 tower domain
Superfamily:BRCA2 tower domain
Family:BRCA2 tower domain
62c2y3aA_
not modelled 7.6 15 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941
63d1n8ja_
not modelled 7.5 12 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
64c2cblA_
not modelled 7.3 23 PDB header:complex (proto-oncogene/peptide)
Chain: A: PDB Molecule:proto-oncogene cbl;
PDBTitle: n-terminal domain of cbl in complex with its binding site2 on zap-70
65c3bunB_
not modelled 6.9 23 PDB header:ligase/signaling protein
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase cbl;
PDBTitle: crystal structure of c-cbl-tkb domain complexed with its2 binding motif in sprouty4
66d1ppva_
not modelled 6.8 27 Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
67c2ifoA_
not modelled 6.6 57 PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: model-building studies of inovirus: genetic variations on a2 geometric theme
68c2e6xD_
not modelled 6.5 18 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein ttha1281;
PDBTitle: x-ray structure of tt1592 from thermus thermophilus hb8
69d1sxjd1
not modelled 6.3 9 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
70c3qf7D_
not modelled 6.2 23 PDB header:hydrolase
Chain: D: PDB Molecule:mre11;
PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair
71c1bp1A_
not modelled 6.2 12 PDB header:bactericidal
Chain: A: PDB Molecule:bactericidal/permeability-increasing protein;
PDBTitle: crystal structure of bpi, the human bactericidal2 permeability-increasing protein
72d1fskb1
not modelled 6.1 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
73c1w3gA_
not modelled 5.8 54 PDB header:toxin/lectin
Chain: A: PDB Molecule:hemolytic lectin from laetiporus sulphureus;
PDBTitle: hemolytic lectin from the mushroom laetiporus sulphureus2 complexed with two n-acetyllactosamine molecules.
74c3klqB_
not modelled 5.8 12 PDB header:cell adhesion
Chain: B: PDB Molecule:putative pilus anchoring protein;
PDBTitle: crystal structure of the minor pilin fctb from streptococcus pyogenes2 90/306s
75c2zjbB_
not modelled 5.6 10 PDB header:recombination
Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog;
PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant
76d1vola2
not modelled 5.6 9 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Transcription factor IIB (TFIIB), core domain
77d1n0wa_
not modelled 5.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
78d1qhda1
not modelled 5.5 20 Fold:A virus capsid protein alpha-helical domain
Superfamily:A virus capsid protein alpha-helical domain
Family:vp6, the major capsid protein of group A rotavirus
79c2ihfA_
not modelled 5.5 13 PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of deletion mutant delta 228-252 r190a of the2 single-stranded dna binding protein from thermus aquaticus
80d1szpa2
not modelled 5.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
81c3q91D_
not modelled 5.5 22 PDB header:hydrolase
Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase;
PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14)
82c1v7wA_
not modelled 5.4 6 PDB header:transferase
Chain: A: PDB Molecule:chitobiose phosphorylase;
PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac
83c2kdvA_
not modelled 5.4 10 PDB header:hydrolase
Chain: A: PDB Molecule:rna pyrophosphohydrolase;
PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli
84c2w4eA_
not modelled 5.4 24 PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans
85d1h54a2
not modelled 5.3 9 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Glycosyltransferase family 36 N-terminal domain
86c1j3wB_
not modelled 5.3 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:giding protein-mglb;
PDBTitle: structure of gliding protein-mglb from thermus thermophilus hb8
87c3lsoA_
not modelled 5.2 15 PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane anchored protein;
PDBTitle: crystal structure of putative membrane anchored protein from2 corynebacterium diphtheriae
88c3l9bA_
not modelled 5.2 22 PDB header:membrane protein
Chain: A: PDB Molecule:otoferlin;
PDBTitle: crystal structure of rat otoferlin c2a
89d2bjra1
not modelled 5.1 17 Fold:MFPT repeat-like
Superfamily:MFPT repeat-like
Family:MFPT repeat

Binding site prediction 

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