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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4afiB_

Fold library idPDB HeaderMoleculeTitle
c4afiB_PDB header: endocytosisChain: B: PDB Molecule: ap-3 complex subunit delta-1, vesicle-associated membranePDBTitle: complex between vamp7 longin domain and fragment of delta-2 adaptin from ap3


Added to library: Sat Jun 2 12:07:19 2012
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence GVEHIPVVQIDLSVPLKVPGLPMSDQYVKLEEAMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIP
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Known secondary structure (DSSP)

TTS






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SSS
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TTS
TTSS
S
TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFS
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Known secondary structure (DSSP) SSSTTTTTTS
GGGGGT

TTTT
 .........150..
Sequence SVLAAQLKHHSE
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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