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Job DescriptionO94669
Confidence100.00%DateSun Jul 8 11:54:00 BST 2012
Rank1Aligned Residues384
% Identity23%Templatec1w63P_
PDB info PDB header:endocytosisChain: P: PDB Molecule:adaptor-related protein complex 1, mu 1 subunit; PDBTitle: ap1 clathrin adaptor core
Resolution4.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  TIEAIYLVDTNGALLLQLESRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIFQELEEDVRLCIPTTCDTEPLYI
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Template Sequence  SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSP. ILAHGGVRFMWIKHNNLYLVATSKKNACVSLV
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TTT
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   2.......10.........20.........30.........40........ .50.........60.........70.........80
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  HDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYATCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARD
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Template Sequence  FSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEG. . . . . . . . . . . . . . . . HKLET
Template Known Secondary structure  SS

S
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   81........90.........100.........110.........120.........130......... 140....
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  TVPWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLSLRPGTKLGNVRFHQSVNLKRWK
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Template Sequence  GVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVELEDVKFHQCVRLSRFE
Template Known Secondary structure 


SS
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   145....150.........160.........170.........180.........190.........200.........210.........220....
 
   243......250.........260.........270......... 280.........290.........300.........310........
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Query Sequence  QHPDQIEFIPPDGKFTLASFQTDFATQKSLPVVVEAK. . . . NKLDGRFEVRIRNTGKKSVENLKILITIPQALKSVTVTE
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Template Sequence  ND. RTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKT
Template Known Secondary structure  S
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S




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   249250 .........260.........270.........280.........290.........300.........310.........320.......
 
   319320.........330.........340.........350.........360.........370.........380.........390........
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Query Sequence  GNYIFRASKYTHMEEGILEWSVKKLAWTSPALVLTGFLAPLKKDANSTEESSSYSKLEHLDLQYKLQGSTLHNFKVESLK
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Template Sequence  TVGSVK. . . . WVPENSEIVWSVKSFPGGKEYLMRAHFGLK. . . . . . . . . . . . . . . . . PPISVKFEIPYFTTSGIQVRYLK
Template Known Secondary structure  SSS....TGGG
STT


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   328.330... ......340.........350.........360... ......370.........380......
 
   399400.........410.........420.....
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Query Sequence  MLNHPDKKSYKGVKHTIIAQNVSFRFR
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Template Sequence  IIEKSGYQAIPWVRYITQNGDYQLRTQ
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BS



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   397..400.........410.........420...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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