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Job DescriptionO94669
Confidence100.00%DateSun Jul 8 11:54:00 BST 2012
Rank7Aligned Residues229
% Identity24%Templatec3l81A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:ap-4 complex subunit mu-1; PDBTitle: crystal structure of adaptor protein complex 4 (ap-4) mu4 subunit c-2 terminal domain, in complex with a sorting peptide from the amyloid3 precursor protein (app)
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   176...180.........190.........200.........210.........220...... ...230.........240.
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Query Sequence  NEFFIHVLERVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLSLRPGTK. . . . . . . . . . . . . . LGNVRFHQSVNLKRW
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Template Sequence  NEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYGPGIRVDEVSFHSSVNLDEF
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   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   242.......250.........260.........270......... 280.........290.........300.........310....
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Query Sequence  KQHPDQIEFIPPDGKFTLASFQTDFATQKSLPVVVEAK. . . . . . . NKLDGRFEVRIRNTGKKSVENLKILITIPQALKSV
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Template Sequence  ESH. RILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSL
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   265.. ..270.........280.........290.........300.........310.........320.........330.........340...
 
   315....320.........330.........340.........350.........360.........370.........380.........390....
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Query Sequence  TVTEGNYIFRASKYTHMEEGILEWSVKKLAWTSPALVLTGFLAPLKKDANSTEESSSYSKLEHLDLQYKLQGSTLHNFKV
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Template Sequence  SQELSSPEQK. . . . AELAEGALRWDLPRVQGGSQLSGLFQMDVPGPPGLG. . . . . . . . . . LGPASLSFELPRHTCSGLQV
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   344.....350... ......360.........370.........380......... 390.........400.........
 
   395....400.........410.........420....
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Query Sequence  ESLKMLNHPDKKSYKGVKHTIIAQNVSFRF
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Template Sequence  RFLRL. . . . . AFPHKWVRHLSHSDAYVIRI
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   422.... ...430.........440......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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