Emaill.a.kelley@imperial.ac.uk
DescriptionO94669
DateSun Jul 8 11:54:00 BST 2012
Unique Job ID9ab4a24c790e374c

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c1w63P_



100.0 23 PDB header:endocytosis
Chain: P: PDB Molecule:adaptor-related protein complex 1, mu 1 subunit;
PDBTitle: ap1 clathrin adaptor core
2c2jkrM_



100.0 21 PDB header:endocytosis
Chain: M: PDB Molecule:ap-2 complex subunit mu-1;
PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse
3c1bw8A_



100.0 23 PDB header:peptide binding protein
Chain: A: PDB Molecule:protein (mu2 adaptin subunit);
PDBTitle: mu2 adaptin subunit (ap50) of ap2 adaptor (second domain),2 complexed with egfr internalization peptide fyralm
4c4en2M_



100.0 26 PDB header:viral protein/immune system
Chain: M: PDB Molecule:ap-1 complex subunit mu-1;
PDBTitle: hiv-1 nef in complex with mhc-i cytoplasmic domain and mu1 adaptin2 subunit of ap1 adaptor (second domain)
5d2pr9a1



100.0 24 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
Family:Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
6c3ml6D_



100.0 23 PDB header:protein transport
Chain: D: PDB Molecule:chimeric complex between protein dishevlled2 homolog dvl-2
PDBTitle: a complex between dishevlled2 and clathrin adaptor ap-2
7c3l81A_



100.0 24 PDB header:transport protein
Chain: A: PDB Molecule:ap-4 complex subunit mu-1;
PDBTitle: crystal structure of adaptor protein complex 4 (ap-4) mu4 subunit c-2 terminal domain, in complex with a sorting peptide from the amyloid3 precursor protein (app)
8d1gw5m2



100.0 17 Fold:Profilin-like
Superfamily:SNARE-like
Family:Clathrin coat assembly domain
9c2hf6A_



100.0 14 PDB header:protein transport
Chain: A: PDB Molecule:coatomer subunit zeta-1;
PDBTitle: solution structure of human zeta-cop
10d1gw5s_



100.0 16 Fold:Profilin-like
Superfamily:SNARE-like
Family:Clathrin coat assembly domain
11c1w63T_



100.0 13 PDB header:endocytosis
Chain: T: PDB Molecule:adapter-related protein complex 1 sigma 1a
PDBTitle: ap1 clathrin adaptor core
12c3g9hA_



99.1 17 PDB header:endocytosis
Chain: A: PDB Molecule:suppressor of yeast profilin deletion;
PDBTitle: crystal structure of the c-terminal mu homology domain of2 syp1
13c3cueM_



96.0 13 PDB header:protein transport
Chain: M: PDB Molecule:transport protein particle 23 kda subunit;
PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p
14c1skoA_



95.9 9 PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
15c2dmwA_



95.3 15 PDB header:membrane protein
Chain: A: PDB Molecule:synaptobrevin-like 1 variant;
PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1
16c4afiB_



95.2 12 PDB header:endocytosis
Chain: B: PDB Molecule:ap-3 complex subunit delta-1, vesicle-associated membrane
PDBTitle: complex between vamp7 longin domain and fragment of delta-2 adaptin from ap3
17c3cueO_



94.9 11 PDB header:protein transport
Chain: O: PDB Molecule:transport protein particle 18 kda subunit;
PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p
18d3cpta1



94.9 8 Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
19c2j3tC_



94.8 17 PDB header:transport
Chain: C: PDB Molecule:trafficking protein particle complex subunit 1;
PDBTitle: the crystal structure of the bet3-trs33-bet5-trs23 complex.
20c3kyqA_



94.0 7 PDB header:transferase
Chain: A: PDB Molecule:synaptobrevin homolog ykt6;
PDBTitle: lipid-induced conformational switch controls fusion activity of longin2 domain snare ykt6
21d1ioua_



not modelled 93.3 15 Fold:Profilin-like
Superfamily:SNARE-like
Family:Synatpobrevin N-terminal domain
22c3egdC_



not modelled 90.8 11 PDB header:protein transport
Chain: C: PDB Molecule:vesicle-trafficking protein sec22b;
PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22 and bound3 to the transport signal sequence of vesicular stomatitis4 virus glycoprotein
23c2nupC_



not modelled 90.8 11 PDB header:protein transport
Chain: C: PDB Molecule:vesicle-trafficking protein sec22b;
PDBTitle: crystal structure of the human sec23a/24a heterodimer,2 complexed with the snare protein sec22b
24c2vx8D_



not modelled 90.3 13 PDB header:endocytosis,exocytosis
Chain: D: PDB Molecule:nucleoporin-like protein rip, vesicle-associated
PDBTitle: vamp7 longin domain hrb peptide complex
25d1ifqa_



not modelled 88.8 12 Fold:Profilin-like
Superfamily:SNARE-like
Family:Synatpobrevin N-terminal domain
26c2zmvB_



not modelled 83.1 18 PDB header:transport protein
Chain: B: PDB Molecule:trafficking protein particle complex subunit 4;
PDBTitle: crystal structure of synbindin
27d2j3wa1



not modelled 80.3 10 Fold:Profilin-like
Superfamily:SNARE-like
Family:Sedlin (SEDL)
28d2fh5a1



not modelled 56.9 6 Fold:Profilin-like
Superfamily:SNARE-like
Family:SRP alpha N-terminal domain-like
29c2go51_



not modelled 55.6 7 PDB header:translation/rna
Chain: 1: PDB Molecule:signal recognition particle receptor alpha
PDBTitle: structure of signal recognition particle receptor (sr) in2 complex with signal recognition particle (srp) and3 ribosome nascent chain complex
30c2pnyA_



not modelled 37.3 27 PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2;
PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2
31d3buxb3



not modelled 30.3 23 Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
32c2wl8D_



not modelled 30.3 14 PDB header:protein transport
Chain: D: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: x-ray crystal structure of pex19p
33c3npkB_



not modelled 25.8 14 PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: the crystal structure of geranyltranstransferase from campylobacter2 jejuni
34c1r77A_



not modelled 25.6 6 PDB header:hydrolase
Chain: A: PDB Molecule:cell wall targeting domain of glycylglycine
PDBTitle: crystal structure of the cell wall targeting domain of2 peptidylglycan hydrolase ale-1
35c2i6kA_



not modelled 22.9 40 PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1;
PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog
36d2zcta1



not modelled 18.1 18 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
37c3op0B_



not modelled 17.4 15 PDB header:signaling protein/signaling protein regu
Chain: B: PDB Molecule:signal transduction protein cbl-c;
PDBTitle: crystal structure of cbl-c (cbl-3) tkb domain in complex with egfr2 py1069 peptide
38d1k4na_



not modelled 15.1 22 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Hypothetical protein YecM (EC4020)
39c2v2gC_



not modelled 15.0 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxiredoxin 6;
PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form
40d1prxa_



not modelled 13.2 15 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
41d1hzta_



not modelled 13.0 20 Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
42c2wxoA_



not modelled 12.6 15 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: the crystal structure of the murine class ia pi 3-kinase2 p110delta in complex with as5.
43d1xcca_



not modelled 12.0 9 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
44d1vetb_



not modelled 11.9 13 Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
45d2cv4a1



not modelled 11.9 17 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
46c2l0rA_



not modelled 11.7 17 PDB header:hydrolase,toxin
Chain: A: PDB Molecule:lethal factor;
PDBTitle: conformational dynamics of the anthrax lethal factor catalytic center
47d1e7ua4



not modelled 11.2 12 Fold:Protein kinase-like (PK-like)
Superfamily:Protein kinase-like (PK-like)
Family:Phoshoinositide 3-kinase (PI3K), catalytic domain
48d2fi0a1



not modelled 11.2 13 Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
49c1e8zA_



not modelled 10.6 12 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase catalytic subunit;
PDBTitle: structure determinants of phosphoinositide 3-kinase2 inhibition by wortmannin, ly294002, quercetin, myricetin3 and staurosporine
50d1qmva_



not modelled 10.4 12 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
51d1n8va_



not modelled 9.9 15 Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2
52c3e6qL_



not modelled 9.7 19 PDB header:isomerase
Chain: L: PDB Molecule:putative 5-carboxymethyl-2-hydroxymuconate isomerase;
PDBTitle: putative 5-carboxymethyl-2-hydroxymuconate isomerase from pseudomonas2 aeruginosa.
53c2rd0A_



not modelled 9.4 12 PDB header:transferase/oncoprotein
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: structure of a human p110alpha/p85alpha complex
54d1mqea_



not modelled 9.4 29 Fold:Nudix
Superfamily:Nudix
Family:MutT-like
55d1uula_



not modelled 9.0 9 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
56c1n4kA_



not modelled 9.0 10 PDB header:membrane protein
Chain: A: PDB Molecule:inositol 1,4,5-trisphosphate receptor type 1;
PDBTitle: crystal structure of the inositol 1,4,5-trisphosphate2 receptor binding core in complex with ip3
57d1so9a_



not modelled 8.5 6 Fold:Ctag/Cox11
Superfamily:Ctag/Cox11
Family:Ctag/Cox11
58c1so9A_



not modelled 8.5 6 PDB header:metal transport
Chain: A: PDB Molecule:cytochrome c oxidase assembly protein ctag;
PDBTitle: solution structure of apocox11, 30 structures
59d1w5ra1



not modelled 8.2 13 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
60d2aeea1



not modelled 7.9 18 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
61d1iyjb2



not modelled 7.8 22 Fold:BRCA2 tower domain
Superfamily:BRCA2 tower domain
Family:BRCA2 tower domain
62c2y3aA_



not modelled 7.6 15 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941
63d1n8ja_



not modelled 7.5 12 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
64c2cblA_



not modelled 7.3 23 PDB header:complex (proto-oncogene/peptide)
Chain: A: PDB Molecule:proto-oncogene cbl;
PDBTitle: n-terminal domain of cbl in complex with its binding site2 on zap-70
65c3bunB_



not modelled 6.9 23 PDB header:ligase/signaling protein
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase cbl;
PDBTitle: crystal structure of c-cbl-tkb domain complexed with its2 binding motif in sprouty4
66d1ppva_



not modelled 6.8 27 Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
67c2ifoA_



not modelled 6.6 57 PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: model-building studies of inovirus: genetic variations on a2 geometric theme
68c2e6xD_



not modelled 6.5 18 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein ttha1281;
PDBTitle: x-ray structure of tt1592 from thermus thermophilus hb8
69d1sxjd1



not modelled 6.3 9 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
70c3qf7D_



not modelled 6.2 23 PDB header:hydrolase
Chain: D: PDB Molecule:mre11;
PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair
71c1bp1A_



not modelled 6.2 12 PDB header:bactericidal
Chain: A: PDB Molecule:bactericidal/permeability-increasing protein;
PDBTitle: crystal structure of bpi, the human bactericidal2 permeability-increasing protein
72d1fskb1



not modelled 6.1 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
73c1w3gA_



not modelled 5.8 54 PDB header:toxin/lectin
Chain: A: PDB Molecule:hemolytic lectin from laetiporus sulphureus;
PDBTitle: hemolytic lectin from the mushroom laetiporus sulphureus2 complexed with two n-acetyllactosamine molecules.
74c3klqB_



not modelled 5.8 12 PDB header:cell adhesion
Chain: B: PDB Molecule:putative pilus anchoring protein;
PDBTitle: crystal structure of the minor pilin fctb from streptococcus pyogenes2 90/306s
75c2zjbB_



not modelled 5.6 10 PDB header:recombination
Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog;
PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant
76d1vola2



not modelled 5.6 9 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Transcription factor IIB (TFIIB), core domain
77d1n0wa_



not modelled 5.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
78d1qhda1



not modelled 5.5 20 Fold:A virus capsid protein alpha-helical domain
Superfamily:A virus capsid protein alpha-helical domain
Family:vp6, the major capsid protein of group A rotavirus
79c2ihfA_



not modelled 5.5 13 PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of deletion mutant delta 228-252 r190a of the2 single-stranded dna binding protein from thermus aquaticus
80d1szpa2



not modelled 5.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
81c3q91D_



not modelled 5.5 22 PDB header:hydrolase
Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase;
PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14)
82c1v7wA_



not modelled 5.4 6 PDB header:transferase
Chain: A: PDB Molecule:chitobiose phosphorylase;
PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac
83c2kdvA_



not modelled 5.4 10 PDB header:hydrolase
Chain: A: PDB Molecule:rna pyrophosphohydrolase;
PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli
84c2w4eA_



not modelled 5.4 24 PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans
85d1h54a2



not modelled 5.3 9 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Glycosyltransferase family 36 N-terminal domain
86c1j3wB_



not modelled 5.3 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:giding protein-mglb;
PDBTitle: structure of gliding protein-mglb from thermus thermophilus hb8
87c3lsoA_



not modelled 5.2 15 PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane anchored protein;
PDBTitle: crystal structure of putative membrane anchored protein from2 corynebacterium diphtheriae
88c3l9bA_



not modelled 5.2 22 PDB header:membrane protein
Chain: A: PDB Molecule:otoferlin;
PDBTitle: crystal structure of rat otoferlin c2a
89d2bjra1



not modelled 5.1 17 Fold:MFPT repeat-like
Superfamily:MFPT repeat-like
Family:MFPT repeat