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Job DescriptionO94669
Confidence95.22%DateSun Jul 8 11:54:00 BST 2012
Rank16Aligned Residues92
% Identity12%Templatec4afiB_
PDB info PDB header:endocytosisChain: B: PDB Molecule:ap-3 complex subunit delta-1, vesicle-associated membrane PDBTitle: complex between vamp7 longin domain and fragment of delta-2 adaptin from ap3
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MSTIEAIYLVDTNGALLLQLESRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIFQELEEDVRLCIPTTCDTEPL
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Template Sequence  MAILFAVVA. . . RGTTILAKH. . . AWCGGNFLEVTEQILAKIPSENN. KLTYSHGNYLFHYICQDRIVYLCITDDDFERS
Template Known Secondary structure  S
...TT...SS
S
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   54.....60.. .......70. ........80.........90.... .....100.........110.........120......
 
   81........90.........
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Query Sequence  YIHDIMRRIVDVVKTFFGG
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Template Sequence  RAFSFLNEVKKRFQTTYGS
Template Known Secondary structure  GG
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   127..130.........140.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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