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Job DescriptionO94669
Confidence100.00%DateSun Jul 8 11:54:00 BST 2012
Rank3Aligned Residues243
% Identity23%Templatec1bw8A_
PDB info PDB header:peptide binding proteinChain: A: PDB Molecule:protein (mu2 adaptin subunit); PDBTitle: mu2 adaptin subunit (ap50) of ap2 adaptor (second domain),2 complexed with egfr internalization peptide fyralm
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   164.....170.........180.........190.........200.........210.........220...... ...230.........
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Query Sequence  VPWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLSLRPGTK. . . . LGNVRFHQSVNLK
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Template Sequence  IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIKQSIAIDDCTFHQCVRL.
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   159160.........170.........180.........190.........200.........210.........220.........230.......
 
   240.........250.........260.........270......... 280.........290.........300.........310.....
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Query Sequence  RWKQHPDQIEFIPPDGKFTLASFQTDFATQKSLPVVVEAK. . . . NKLDGRFEVRIRNTGKKSVENLKILITIPQALKSVT
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Template Sequence  . . . SE. RSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQ
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   255. ...260.........270.........280.........290.........300.........310.........320.........330
 
   316...320.........330.........340.........350.........360.........370.........380.........390.....
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Query Sequence  VTEGNYIFRASKYTHMEEGILEWSVKKLAWTSPALVLTGFLAPLKKDANSTEESSSYSKLEHLDLQYKLQGSTLHNFKVE
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Template Sequence  VICMKGKAK. . . . YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWA. . . . . . . RPPISMNFEVP. FAPSGLKVR
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   335....340... ......350.........360.........370.........380.. .......390... ......400..
 
   396...400. ........410.........420...
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Query Sequence  SLKMLN. . . . HPDKKSYKGVKHTIIAQNVSFR
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Template Sequence  YLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR
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   403......410.........420.........430....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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