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Job DescriptionO94669
Confidence100.00%DateSun Jul 8 11:54:00 BST 2012
Rank2Aligned Residues387
% Identity21%Templatec2jkrM_
PDB info PDB header:endocytosisChain: M: PDB Molecule:ap-2 complex subunit mu-1; PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse
Resolution2.98 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  IEAIYLVDTNGALLLQLESRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIFQELEEDVRLCIPTTCDTEPLYIH
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Template Sequence  IGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSP. . VTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVF
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   2.......10.........20.........30.........40...... ...50.........60.........70.........
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  DIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYATCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDT
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Template Sequence  EFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQ. . . . . . . . . . . . . . . . . .
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   80.........90.........100.........110.........120.........130.........140.
 
   164.....170.........180.........190.........200.........210.........220.... .....230.
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Query Sequence  VPWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLSLRPG. . . . . . . . . . . . TKLGNVR
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Template Sequence  IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIETSKSGKQSIAIDDCT
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   159160.........170.........180.........190.........200.........210.........220.........230........
 
   232.......240.........250.........260.........270......... 280.........290.........300.......
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Query Sequence  FHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQTDFATQKSLPVVVEAK. . . . NKLDGRFEVRIRNTGKKSVENLKILITI
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Template Sequence  FHQCVRLSKFDSE. RSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPT
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   248.250.........260 .........270.........280.........290.........300.........310.........320......
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  PQALKSVTVTEGNYIFRASKYTHMEEGILEWSVKKLAWTSPALVLTGFLAPLKKDANSTEESSSYSKLEHLDLQYKLQGS
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Template Sequence  PLNTSGVQVICMKGKAK. . . . YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWA. . . . . . . RPPISMNFEVP. F
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BSSS....GGGTTT




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   327..330.........340... ......350.........360.........370.........380.. .......390... .
 
   388.390.........400.. .......410.........420...
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Query Sequence  TLHNFKVESLKMLNH. . . . PDKKSYKGVKHTIIAQNVSFR
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Template Sequence  APSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR
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   395....400.........410.........420.........430....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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