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Job DescriptionO94669
Confidence99.14%DateSun Jul 8 11:54:00 BST 2012
Rank12Aligned Residues218
% Identity17%Templatec3g9hA_
PDB info PDB header:endocytosisChain: A: PDB Molecule:suppressor of yeast profilin deletion; PDBTitle: crystal structure of the c-terminal mu homology domain of2 syp1
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   181........190.........200........ .210..... ....220........ .230.........240.........250
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Query Sequence  HVLERVSAVYQPNGKLAFGTVKSDMECK. . . CQISGMP. . . LLLLSLRPGTKLG. . . . NVRFHQSVNLKRWKQHPDQIEF
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Template Sequence  SIAEVLNASF. KDGMLQNSQLIGEIALNYLPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIERVAPEEFKVNPSFIDS
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   615....620.... .....630.........640.........650.........660.........670.........680.........690...
 
   251........260.........270......... 280.........290....... ..300.........310.........320..
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Query Sequence  IPPDGKFTLASFQTDFATQKSLPVVVEAK. . . NKLDGRFEVRIRNTGKKS. . . . . VENLKILITIPQALKSVTVTEGNYI
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Template Sequence  R. . . . TLGAIKYSIK. EPIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDGANATSALSKPQGS
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   694 .....700.... .....710.........720.........730.........740.........750.........760........
 
   323......330.........340... ......350.........360.........370.........380.........
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Query Sequence  FRASKYTHMEEGILEWSVKKL. . . . AWTSPALVLTGFLAPLKKDANSTEESSSYSKLEHLDLQYKLQGSTL. . . . . . . . .
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Template Sequence  . . . . . . FSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLAHES. . . . . . . . . . AKGVITKFTISETDNVALPHSGAG
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   769770.........780.........790.........800........ .810.........820.........830..
 
   390.........400.........410 .........420.
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Query Sequence  HNFKVESLKMLNHPDKKSYKG. . . . VKHTIIAQNVS
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Template Sequence  SGITLTCQELDE. NNPFGGEWLDVNTKRTLTTGNYH
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   833......840.... .....850.........860.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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