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Job DescriptionO94669
Confidence100.00%DateSun Jul 8 11:54:00 BST 2012
Rank4Aligned Residues239
% Identity26%Templatec4en2M_
PDB info PDB header:viral protein/immune systemChain: M: PDB Molecule:ap-1 complex subunit mu-1; PDBTitle: hiv-1 nef in complex with mhc-i cytoplasmic domain and mu1 adaptin2 subunit of ap1 adaptor (second domain)
Resolution2.58 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   165....170.........180.........190.........200.........210.........220...... ...230.
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Query Sequence  PWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLSLRPGTK. . . . . . . . . . . . . LGNVR
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Template Sequence  SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVK
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   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
   232.......240.........250.........260.........270......... 280.........290.........300.......
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Query Sequence  FHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQTDFATQKSLPVVVEAK. . . . NKLDGRFEVRIRNTGKKSVENLKILITI
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Template Sequence  FHQCVRLSRFEND. RTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPV
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   238.240.........250 .........260.........270.........280.........290.........300.........310......
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  PQALKSVTVTEGNYIFRASKYTHMEEGILEWSVKKLAWTSPALVLTGFLAPLKKDANSTEESSSYSKLEHLDLQYKLQGS
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Template Sequence  PNDADSPKFKTTVGSVK. . . . WVPENSEIVWSVKSFPGGKEYLMRAHFGLK. . . . . . . . . . . . . . . . . PPISVKFEIPYF
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   317..320.........330... ......340.........350.........360... ......370.....
 
   388.390.........400.........410.........420.....
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Query Sequence  TLHNFKVESLKMLNHPDKKSYKGVKHTIIAQNVSFRFR
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Template Sequence  TTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRTQ
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   386...390.........400.........410.........420...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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