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Job DescriptionO94669
Confidence83.13%DateSun Jul 8 11:54:00 BST 2012
Rank26Aligned Residues92
% Identity18%Templatec2zmvB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:trafficking protein particle complex subunit 4; PDBTitle: crystal structure of synbindin
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20..
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Query Sequence  TIEAIYLVDTNGALLLQLES. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKE
Template Known Secondary structure 

TTS








SS
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BTTB
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B
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   23......30.........40......... 50.........60..... ....70.........80..
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Query Sequence  . . . . . . . . . . . . . . . . . . RGRTSPITLEHIKNELFRYKLRNEEPP. FILHNKNFLIFQELEE. DVRLCIPTTCDTEPLYI
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Template Sequence  VLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID.
Template Known Secondary structure  SS
STT





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   82.......90.........100.........110.........120.........130.........140.........150.........160
 
   83......90......
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Query Sequence  HDIMRRIVDVVKTF
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Template Sequence  . SLLRKIYEIYSDF
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   168.170.........180
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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