PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2pnyA_

Fold library id	PDB Header	Molecule	Title
c2pnyA_	PDB header: isomerase	Chain: A: PDB Molecule: isopentenyl-diphosphate delta-isomerase 2;	PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2

Links to external resources
Added to library: Tue Mar 16 14:09:59 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L V P R G S M S D I N L D W V D R R Q L Q R L E E M L I V V D E N D K V I G A D T K R N C H L N E N I E K G L L H R A F S V V L F N T K N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G G
T T S
T T
T T
T B T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I L I Q Q R S D T K V T F P G Y F T D S C S S H P L Y N P A E L E E K D A I G V R R A A Q R R L Q A E L G I P G E Q I S P E D I V F M T I Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S T T
B
S
B S S
G G G
T T T
G G G S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H H K A K S D R I W G E H E I C Y L L L V R K N V T L N P D P S E T K S I L Y L S Q E E L W E L L E R E A R G E V K V T P W L R T I A E R F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S B
T T T
T S S
B
T

. . . . . . . . . 220 . . . . . . . . . 230 . . .

Sequence L Y R W W P H L D D V T P F V E L H K I H R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T
G G G
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	V	P	R	G	S	M	S	D	I	N	L	D	W	V	D	R	R	Q	L	Q	R	L	E	E	M	L	I	V	V	D	E	N	D	K	V	I	G	A	D	T	K	R	N	C	H	L	N	E	N	I	E	K	G	L	L	H	R	A	F	S	V	V	L	F	N	T	K	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S		G	G	G	G			T	T	S								T	T								T	T													T	B					T	T	T													T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	L	I	Q	Q	R	S	D	T	K	V	T	F	P	G	Y	F	T	D	S	C	S	S	H	P	L	Y	N	P	A	E	L	E	E	K	D	A	I	G	V	R	R	A	A	Q	R	R	L	Q	A	E	L	G	I	P	G	E	Q	I	S	P	E	D	I	V	F	M	T	I	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T		S	S	S	T	T		B			S						B	S	S							G	G	G																			T	T	T			G	G	G	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	H	K	A	K	S	D	R	I	W	G	E	H	E	I	C	Y	L	L	L	V	R	K	N	V	T	L	N	P	D	P	S	E	T	K	S	I	L	Y	L	S	Q	E	E	L	W	E	L	L	E	R	E	A	R	G	E	V	K	V	T	P	W	L	R	T	I	A	E	R	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S	S	B																					T	T	T																						T	S	S		B											T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence	L	Y	R	W	W	P	H	L	D	D	V	T	P	F	V	E	L	H	K	I	H	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	T	T			G	G	G			S	S