Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionDangers_of_Intensive
DateSun Sep 7 17:29:03 BST 2014
Unique Job ID093f1646326a5fe1
SequenceMAGPLRAPLL ... Download FASTA
Job Expiry

Final Model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:65.135 Y:92.545 Z:50.740
Confidence Summary
1 







































































































































































































 200
201 






















































































Confidence Key
High(9)                    Low (0)
 
60% of residues modelled at >90% confidence (Details)
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1roaa_



100.0 56
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cystatins
2d1r4ca_



100.0 97
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cystatins
3c2ch9A_



100.0 33
PDB header:inhibitor
Chain: A: PDB Molecule:cystatin f;
PDBTitle: crystal structure of dimeric human cystatin f
4d1cewi_



100.0 44
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cystatins
5c4it7C_



100.0 27
PDB header:hydrolase inhibitor
Chain: C: PDB Molecule:cpi;
PDBTitle: crystal structure of al-cpi
6c3mwzA_



100.0 25
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:sialostatin l2;
PDBTitle: crystal structure of the selenomethionine derivative of the l 22,47,2 100 m mutant of sialostatin l2
7c3l0rA_



100.0 23
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:cystatin-2;
PDBTitle: crystal structure of salivary cystatin from the soft tick ornithodoros2 moubata
8c4lziA_



99.9 24
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:multicystatin;
PDBTitle: characterization of solanum tuberosum multicystatin and significance2 of core domains
9c2l4vA_



99.9 30
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:cystatin;
PDBTitle: three dimensional structure of pineapple cystatin
10c3imaD_



99.8 30
PDB header:hydrolase/hydrolase inhibitor
Chain: D: PDB Molecule:cysteine proteinase inhibitor;
PDBTitle: complex strcuture of tarocystatin and papain
11d1eqka_



99.8 23
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cystatins
12c2w9pC_



99.8 20
PDB header:hydrolase inhibitor
Chain: C: PDB Molecule:multicystatin;
PDBTitle: crystal structure of potato multicystatin
13c4eycA_



99.8 19
PDB header:unknown function
Chain: A: PDB Molecule:cathelicidin antimicrobial peptide;
PDBTitle: crystal structure of the cathelin-like domain of human cathelicidin2 ll-37 (hcld)
14c3ul5C_



99.7 25
PDB header:hydrolase inhibitor
Chain: C: PDB Molecule:canecystatin-1;
PDBTitle: saccharum officinarum canecystatin-1 in space group c2221
15d2b4cg1



99.6 80
Fold:gp120 core
Superfamily:gp120 core
Family:gp120 core
16d1stfi_



99.5 24
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cystatins
17c3j5mI_



99.5 72
PDB header:viral protein/immune system
Chain: I: PDB Molecule:bg505 sosip gp120;
PDBTitle: cryo-em structure of the bg505 sosip.664 hiv-1 env trimer with 3 pgv042 fabs
18c1ce4A_



99.0 85
PDB header:viral protein
Chain: A: PDB Molecule:protein (v3 loop of hiv-1 envelope protein);
PDBTitle: conformational model for the consensus v3 loop of the2 envelope protein gp120 of hiv-1
19c3ngbI_



98.7 62
PDB header:viral protein/immune system
Chain: I: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: crystal structure of broadly and potently neutralizing antibody vrc012 in complex with hiv-1 gp120
20d1nb5i_



98.6 24
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cystatins
21d1kwia_



not modelled 97.8 22
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cathelicidin motif
22c4i3rG_



not modelled 97.7 51
PDB header:viral protein/immune system
Chain: G: PDB Molecule:outer domain of hiv-1 gp120 (ker2018 od4.2.2);
PDBTitle: crystal structure of the outer domain of hiv-1 gp120 in complex with2 vrc-pg04 space group p3221
23d2bo9b1



not modelled 97.3 17
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Latexin-like
24c2bo9B_



not modelled 96.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:human latexin;
PDBTitle: human carboxypeptidase a4 in complex with human latexin.
25c3rjqA_



not modelled 96.8 84
PDB header:viral protein/immune system
Chain: A: PDB Molecule:c186 gp120;
PDBTitle: crystal structure of anti-hiv llama vhh antibody a12 in complex with2 c186 gp120
26c3jwdA_



not modelled 96.5 91
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 gp120 envelope glycoprotein;
PDBTitle: structure of hiv-1 gp120 with gp41-interactive region: layered2 architecture and basis of conformational mobility
27c3dnlB_



not modelled 96.3 82
PDB header:viral protein
Chain: B: PDB Molecule:hiv-1 envelope glycoprotein gp120;
PDBTitle: molecular structure for the hiv-1 gp120 trimer in the b12-2 bound state
28d2nxya1



not modelled 96.3 79
Fold:gp120 core
Superfamily:gp120 core
Family:gp120 core
29d1yymg1



not modelled 95.9 64
Fold:gp120 core
Superfamily:gp120 core
Family:gp120 core
30c4ccvA_



not modelled 93.6 21
PDB header:blood clotting
Chain: A: PDB Molecule:histidine-rich glycoprotein;
PDBTitle: crystal structure of histidine-rich glycoprotein n2 domain2 reveals redox activity at an interdomain disulfide bridge:3 implications for the regulation of angiogenesis
31c3mlwQ_



not modelled 92.1 100
PDB header:immune system
Chain: Q: PDB Molecule:hiv-1 gp120 third variable region (v3) crown;
PDBTitle: crystal structure of anti-hiv-1 v3 fab 1006-15d in complex with an mn2 v3 peptide
32c3ujiP_



not modelled 92.0 100
PDB header:immune system
Chain: P: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: crystal structure of anti-hiv-1 v3 fab 2558 in complex with mn peptide
33c3ujjP_



not modelled 91.8 65
PDB header:immune system
Chain: P: PDB Molecule:gp120;
PDBTitle: crystal structure of anti-hiv-1 v3 fab 4025 in complex with con a2 peptide
34c2b1aP_



not modelled 89.2 75
PDB header:immune system
Chain: P: PDB Molecule:ug1033 peptide of exterior membrane glycoprotein gp120;
PDBTitle: crystal structure analysis of anti-hiv-1 v3 fab 2219 in complex with2 ug1033 peptide
35c3mlwP_



not modelled 88.5 100
PDB header:immune system
Chain: P: PDB Molecule:hiv-1 gp120 third variable region (v3) crown;
PDBTitle: crystal structure of anti-hiv-1 v3 fab 1006-15d in complex with an mn2 v3 peptide
36c2kxgA_



not modelled 80.5 21
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:aspartic protease inhibitor;
PDBTitle: the solution structure of the squash aspartic acid proteinase2 inhibitor (sqapi)
37c2bf1A_



not modelled 80.0 4
PDB header:virus protein
Chain: A: PDB Molecule:exterior membrane glycoprotein gp120;
PDBTitle: structure of an unliganded and fully-glycosylated siv gp1202 envelope glycoprotein
38c1y4cA_



73.1 12
PDB header:de novo protein
Chain: A: PDB Molecule:maltose binding protein fused with designed
PDBTitle: designed helical protein fusion mbp
39c2zv4O_



not modelled 58.4 17
PDB header:structural protein
Chain: O: PDB Molecule:major vault protein;
PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution
40c1acyP_



not modelled 43.8 91
PDB header:complex(antibody/hiv-1 fragment)
Chain: P: PDB Molecule:hiv-1 gp120 (mn isolate);
PDBTitle: crystal structure of the principal neutralizing site of hiv-2 1
41c3mlrP_



not modelled 40.0 50
PDB header:immune system
Chain: P: PDB Molecule:hiv-1 gp120 third variable region (v3) crown;
PDBTitle: crystal structure of anti-hiv-1 v3 fab 2557 in complex with a ny5 v32 peptide
42c2w82C_



not modelled 31.4 24
PDB header:replication inhibitor
Chain: C: PDB Molecule:orf18;
PDBTitle: the structure of arda
43d1fcda3



not modelled 29.7 25
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
44c2e4wA_



not modelled 18.0 26
PDB header:signaling protein
Chain: A: PDB Molecule:metabotropic glutamate receptor 3;
PDBTitle: crystal structure of the extracellular region of the group ii2 metabotropic glutamate receptor complexed with 1s,3s-acpd
45c3fewX_



not modelled 17.4 21
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain
46c3mlvQ_



not modelled 15.5 53
PDB header:immune system
Chain: Q: PDB Molecule:hiv-1 gp120 third variable region (v3) crown;
PDBTitle: crystal structure of anti-hiv-1 v3 fab 2557 in complex with an nof v32 peptide
47c3mlvP_



not modelled 15.5 53
PDB header:immune system
Chain: P: PDB Molecule:hiv-1 gp120 third variable region (v3) crown;
PDBTitle: crystal structure of anti-hiv-1 v3 fab 2557 in complex with an nof v32 peptide
48c3oqtP_



not modelled 14.7 21
PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis
49c3p3wC_



not modelled 13.8 23
PDB header:transport protein
Chain: C: PDB Molecule:glutamate receptor 3;
PDBTitle: structure of a dimeric glua3 n-terminal domain (ntd) at 4.2 a2 resolution
50c3monF_



not modelled 13.6 23
PDB header:sweet-tasting protein
Chain: F: PDB Molecule:monellin;
PDBTitle: crystal structures of two intensely sweet proteins
51d1wkaa1



not modelled 12.5 30
Fold:ValRS/IleRS/LeuRS editing domain
Superfamily:ValRS/IleRS/LeuRS editing domain
Family:ValRS/IleRS/LeuRS editing domain
52c2vxaL_



not modelled 11.8 29
PDB header:flavoprotein
Chain: L: PDB Molecule:dodecin;
PDBTitle: h.halophila dodecin in complex with riboflavin
53c3onrI_



not modelled 11.3 17
PDB header:metal binding protein
Chain: I: PDB Molecule:protein transport protein sece2;
PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site
54c2hlqA_



not modelled 11.0 24
PDB header:transferase
Chain: A: PDB Molecule:bone morphogenetic protein receptor type-2;
PDBTitle: crystal structure of the extracellular domain of the type2 ii bmp receptor
55c3j20F_



not modelled 10.6 10
PDB header:ribosome
Chain: F: PDB Molecule:30s ribosomal protein s5p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
56d2ux9a1



not modelled 10.5 27
Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
57c4uqqD_



not modelled 9.1 17
PDB header:transport protein
Chain: D: PDB Molecule:glutamate receptor ionotropic, kainate 2;
PDBTitle: electron density map of gluk2 desensitized state in2 complex with 2s,4r-4-methylglutamate
58c4f11A_



not modelled 7.9 20
PDB header:signaling protein
Chain: A: PDB Molecule:gamma-aminobutyric acid type b receptor subunit 2;
PDBTitle: crystal structure of the extracellular domain of human gaba(b)2 receptor gbr2
59d2o9ux1



not modelled 7.6 23
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Monellin
60c3sajB_



not modelled 7.6 16
PDB header:transport protein
Chain: B: PDB Molecule:glutamate receptor 1;
PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain
61d1ntga_



not modelled 7.4 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Myf domain
62c3heiF_



not modelled 7.3 27
PDB header:transferase/signaling protein
Chain: F: PDB Molecule:ephrin-a1;
PDBTitle: ligand recognition by a-class eph receptors: crystal structures of the2 epha2 ligand-binding domain and the epha2/ephrin-a1 complex
63c1rrqA_



not modelled 6.9 36
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
64c1zzaA_



not modelled 6.8 24
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
65d1t1ra3



not modelled 6.7 57
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
66d2nqda1



not modelled 6.6 50
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ICP-like
Family:ICP-like
67d2p3ra1



not modelled 6.5 21
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
68c2qzvB_



not modelled 6.4 11
PDB header:structural protein
Chain: B: PDB Molecule:major vault protein;
PDBTitle: draft crystal structure of the vault shell at 9 angstroms2 resolution
69d1mn4a_



not modelled 6.4 25
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:DNA-binding domain from NDT80
70d1vdda_



not modelled 6.3 14
Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
71d1iyka1



not modelled 6.3 9
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
72c3om1A_



not modelled 6.3 21
PDB header:membrane protein
Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2);
PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution
73c4kzzC_



not modelled 6.2 20
PDB header:ribosome
Chain: C: PDB Molecule:40s ribosomal protein s2;
PDBTitle: rabbit 40s ribosomal subunit in complex with mrna, initiator trna and2 eif1a
74d1dx5i1



not modelled 6.2 29
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
75c3qwmA_



not modelled 6.1 9
PDB header:signaling protein
Chain: A: PDB Molecule:iq motif and sec7 domain-containing protein 1;
PDBTitle: crystal structure of gep100, the plextrin homology domain of iq motif2 and sec7 domain-containing protein 1 isoform a
76d1wlta1



not modelled 6.1 17
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:dTDP-sugar isomerase
77c2kkmA_



not modelled 6.0 16
PDB header:translation
Chain: A: PDB Molecule:translation machinery-associated protein 16;
PDBTitle: solution nmr structure of yeast protein yor252w [residues2 38-178]: northeast structural genomics consortium target3 yt654
78d1m5ha2



not modelled 5.9 23
Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
79c3kg2A_



not modelled 5.9 8
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:glutamate receptor 2;
PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775
80d1iica1



not modelled 5.8 11
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
81c2xzmE_



not modelled 5.8 19
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein s5 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
82c1upiA_



not modelled 5.7 26
PDB header:epimerase
Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase;
PDBTitle: mycobacterium tuberculosis rmlc epimerase (rv3465)
83c3h6hB_



not modelled 5.7 17
PDB header:membrane protein
Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2;
PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form
84d1zc6a1



not modelled 5.7 27
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
85c3zeyP_



not modelled 5.6 13
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s2, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
86c3pz6F_



not modelled 5.6 20
PDB header:ligase
Chain: F: PDB Molecule:leucyl-trna synthetase;
PDBTitle: the crystal structure of glleurs-cp1
87d2bvya1



not modelled 5.5 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
88c2lmkA_



not modelled 5.5 20
PDB header:signaling protein
Chain: A: PDB Molecule:exocrine gland-secreting peptide 1;
PDBTitle: solution structure of mouse pheromone esp1
89c4e1jA_



not modelled 5.5 32
PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase in complex with glycerol from2 sinorhizobium meliloti 1021
90d2j5la1



not modelled 5.4 28
Fold:Apical membrane antigen 1
Superfamily:Apical membrane antigen 1
Family:Apical membrane antigen 1
91c2j5lA_



not modelled 5.4 28
PDB header:immune system
Chain: A: PDB Molecule:apical membrane antigen 1;
PDBTitle: structure of a plasmodium falciparum apical membrane2 antigen 1-fab f8.12.19 complex
92d1jb3a_



not modelled 5.4 8
Fold:OB-fold
Superfamily:TIMP-like
Family:The laminin-binding domain of agrin
93d1dzra_



not modelled 5.3 21
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:dTDP-sugar isomerase
94c2wfdB_



not modelled 5.3 20
PDB header:ligase
Chain: B: PDB Molecule:leucyl-trna synthetase, cytoplasmic;
PDBTitle: structure of the human cytosolic leucyl-trna synthetase2 editing domain
95c1m5hF_



not modelled 5.2 23
PDB header:transferase
Chain: F: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: formylmethanofuran:tetrahydromethanopterin2 formyltransferase from archaeoglobus fulgidus
96c2ysaA_



not modelled 5.2 28
PDB header:metal binding protein
Chain: A: PDB Molecule:retinoblastoma-binding protein 6;
PDBTitle: solution structure of the zinc finger cchc domain from the2 human retinoblastoma-binding protein 6 (retinoblastoma-3 binding q protein 1, rbq-1)
97c2fwvA_



not modelled 5.2 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein mtubf_01000852;
PDBTitle: crystal structure of rv0813
98c1vddC_



not modelled 5.2 13
PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
99d1gr0a2



not modelled 5.2 19
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like

Binding site prediction 

The overall confidence in the final model (60% modelled at >90% confidence) was considered too low (<70%) for submission to 3DLigandSite

You may manually submit your model to 3DLigandSite, but please be aware that results may be misleading

Multi-template and ab initio information 

4 templates were selected to model your protein based on heuristics to maximise confidence, percentage identity and alignment coverage. Below is a table indicating where your sequence was covered by each template, colour-coded by the confidence of the match to that template overall.

36 residues were modelled by ab initio. Please note: ab initio modelling is highly unreliable.

 
TemplateConfidence1....................................................................................................
d1r4ca_100% 



































                                                                
d2b4cg199% 



































































































c1y4cA_73% 



































































































c3j5mI_99% 



































































































 
TemplateConfidence101....................................................................................................
d1r4ca_100%                                               





















































d2b4cg199% 



































































































c1y4cA_73% 










































                                                         
c3j5mI_99% 



































































































 
TemplateConfidence201.......................................................................................
d1r4ca_100% 





















































































d2b4cg199% 
























                                                             
c1y4cA_73%                                         













































c3j5mI_99% 
























                                                             
 

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below