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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j5mI_

Fold library idPDB HeaderMoleculeTitle
c3j5mI_PDB header: viral protein/immune systemChain: I: PDB Molecule: bg505 sosip gp120;PDBTitle: cryo-em structure of the bg505 sosip.664 hiv-1 env trimer with 3 pgv042 fabs


Added to library: Sat Nov 16 08:52:08 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWD
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Known secondary structure (DSSP)





S






TT


TSS


S


SS



GGG
GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence QSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRYRLINCNTSAITQ
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Known secondary structure (DSSP) GTTTTT
B








S


SS




SS



SSTT





B

S
SS
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence ACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIR
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Known secondary structure (DSSP)

SS






B

B

TT


SS

SSSSSSB
S
B



BSSS



SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGK
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Known secondary structure (DSSP)
TTTT
TTS

S




S
TT
S

S


S



 .........290.........300.........310.........320.........330.........340.........350
Sequence VVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNDSITLPCRIKQIINMW
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Known secondary structure (DSSP) TTSS





S

TTT

GGGT








T
 .........360.........370.........380.........390.........400.........410.....
Sequence QRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIE
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Known secondary structure (DSSP) TTT





SS




STT

S

S
TTT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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