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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: d2nxya1

Fold library idFoldSuperfamilyFamily
d2nxya1gp120 coregp120 coregp120 core


Added to library: Tue Mar 16 14:28:59 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVGAGSCNTSVITQACPKVSFEPIPIH
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Known secondary structure (DSSP)
TT

TTS



S



SSS















B
 .........80.........90.........100.........110.........120.........130.........140
Sequence YCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIV
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Known secondary structure (DSSP)
B

TT

TT

SSSSB


B



BSSS



SSS

S
TT
TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QLNTSVEINCTGAGHCNIARAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYC
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Known secondary structure (DSSP) TTT
TT





S
STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence NSTQLFNSTWFNGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEI
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Known secondary structure (DSSP)

GGGS




SS
SSSS






S



SS

SS
 .........290.........300....
Sequence FRPGGGDMRDNWRSELYKYKVVKI
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SS confidence























Known secondary structure (DSSP)



TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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