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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: d2b4cg1

Fold library idFoldSuperfamilyFamily
d2b4cg1gp120 coregp120 coregp120 core


Added to library: Tue Mar 16 12:12:53 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VVLENVTEHFNMWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVGAGSCDTSVITQACPKISFEPIPIHY
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Known secondary structure (DSSP)




S

SSS
TT


S

SSS













B

 .........80.........90.........100.........110.........120.........130.........140
Sequence CAPAGFAILKCNDKTFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFTNNAKTIIVQ
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Known secondary structure (DSSP) B

TT

SS

SSSSSB


B




SSS



SSS

S
TT
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LKESVEINCTRPNQNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISRAKWNDTLKQIVIKLREQFENKTI
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Known secondary structure (DSSP)

STT




TT
S





S
SSTTTS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VFNHSSGGDPEIVMHSFNCGGEFFYCNSAQLFNSTWNNNTEGSNNTEGNTITLPCRIKQIINMWQEVGKA
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Known secondary structure (DSSP)



SSSTT
TTTT
SS



S



SS
BS
SSSSS
 .........290.........300.........310.........320.........330.........
Sequence MYAPPIRGQIRCSSNITGLLLTRDGGINENGTEIFRPGGGDMRDNWRSELYKYKVVKIE
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Known secondary structure (DSSP)




SS



S


S



TTTSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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