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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4uqqD_

Fold library idPDB HeaderMoleculeTitle
c4uqqD_PDB header: transport proteinChain: D: PDB Molecule: glutamate receptor ionotropic, kainate 2;PDBTitle: electron density map of gluk2 desensitized state in2 complex with 2s,4r-4-methylglutamate


Added to library: Sat Aug 16 08:49:08 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLG
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Known secondary structure (DSSP)
SSS
S


SSSSSSTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence VAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTV
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Known secondary structure (DSSP)
S


SSTT


S




TT



S
TT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence TVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQA
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Known secondary structure (DSSP) SSTTTGGGTSS


SSGGGGTT

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLL
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Known secondary structure (DSSP) TT

STT


TTGGGB

TTTTTS


S
TTSTTS


SSS
B
 .........290.........300.........310.........320.........330.........340.........350
Sequence DGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNG
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Known secondary structure (DSSP) TT


T
TT






TTS



TT
TT

TTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LRTDFDLDVISLKEEGLEKIGTWDPASGLNMTENRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDL
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Known secondary structure (DSSP)



TTTTT








BTTTB


SS


GGGGS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL
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Known secondary structure (DSSP) T


TT




B
TTT

B
TTS
S
SS
B

TT
S
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence GISILYRKGVFSFLNPLSPDIWMYVLWWFFTLIIISSYTANLAAFLTVERPIDSADDLAKQTKIEYGAVE
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Known secondary structure (DSSP)


GGGTTTTS
T

T




ST
SSST
 .........570.........580.........590.........600.........610.........620.........630
Sequence DGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG
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Known secondary structure (DSSP) TS

STSSSS
TTS
 .........640.........650.........660.........670.........680.........
Sequence GLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEQNIGGIFIE
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Known secondary structure (DSSP) S
S



TT
TT




S





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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