PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4kzzC_

Fold library id	PDB Header	Molecule	Title
c4kzzC_	PDB header: ribosome	Chain: C: PDB Molecule: 40s ribosomal protein s2;	PDBTitle: rabbit 40s ribosomal subunit in complex with mrna, initiator trna and2 eif1a

Links to external resources
Added to library: Sat Jul 27 08:36:55 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G K A G D K E W L P V T K L G R L V K D M K I K S L E E I Y L F S L P I K E S E I I D F F L G A A L K D K V L K I M P V Q K Q T Q A G Q R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T S
T
S
T T
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R F K A F V A I G D Y N G H V G L G M K C S K E V A T A I R G A I I L A K L S I V P V R R G Y W G N K I G K P H T V R C K V T G R C G S V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S T
S S
S S
S
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V R L I P A P R G T G I I S A P V P K K L L L M A G I D D C Y T S A G G C T A T L G N F A K A T F D A I S K T Y S Y L T P D L W K E T V F T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T
S S
G G G T
G G G G

. . . . . . . . . 220 . . . . . .

Sequence K S P Y Q E F T D H L V K T H T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	K	A	G	D	K	E	W	L	P	V	T	K	L	G	R	L	V	K	D	M	K	I	K	S	L	E	E	I	Y	L	F	S	L	P	I	K	E	S	E	I	I	D	F	F	L	G	A	A	L	K	D	K	V	L	K	I	M	P	V	Q	K	Q	T	Q	A	G	Q	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S								S	S								T	T	S											T													S		T	T																S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	F	K	A	F	V	A	I	G	D	Y	N	G	H	V	G	L	G	M	K	C	S	K	E	V	A	T	A	I	R	G	A	I	I	L	A	K	L	S	I	V	P	V	R	R	G	Y	W	G	N	K	I	G	K	P	H	T	V	R	C	K	V	T	G	R	C	G	S	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S										S	S															T									S	S				S	S			S		S	S							T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	R	L	I	P	A	P	R	G	T	G	I	I	S	A	P	V	P	K	K	L	L	L	M	A	G	I	D	D	C	Y	T	S	A	G	G	C	T	A	T	L	G	N	F	A	K	A	T	F	D	A	I	S	K	T	Y	S	Y	L	T	P	D	L	W	K	E	T	V	F	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T					S												T			S							S		G	G	G	T																				G	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	K	S	P	Y	Q	E	F	T	D	H	L	V	K	T	H	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	T	T	T	S		S