PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3j20F_

Fold library id	PDB Header	Molecule	Title
c3j20F_	PDB header: ribosome	Chain: F: PDB Molecule: 30s ribosomal protein s5p;	PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)

Links to external resources
Added to library: Wed Jan 9 15:04:15 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M S Q E W K E Y A K R V L D E W E P K T K L G M M V K E G Q I T D I H E I F R R G Y Q I K E P E I I D V L L P E V N A R E N Q E V L D I A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S
S S T T
S
T
S
S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T V R M T D S G R R V R F R V L A A V G N R D G Y V G L G I G H G K E V G I A I R K A I N Y A K L N I I E I K R G C G S W E C R C R R P H S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T S S S
B S S
S S S
S S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V P F A V E G K E G S V R V R L I P G P R G L G L V I G D V G K K I L R L A G V Q D V W S Q T F G E T R T T V N F A K A V F N A L Y N T N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S
B S
T
S
S

. . . . . . .

Sequence V A I S P E M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	Q	E	W	K	E	Y	A	K	R	V	L	D	E	W	E	P	K	T	K	L	G	M	M	V	K	E	G	Q	I	T	D	I	H	E	I	F	R	R	G	Y	Q	I	K	E	P	E	I	I	D	V	L	L	P	E	V	N	A	R	E	N	Q	E	V	L	D	I	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T										T	T	S				S	S								T	T		S										T						S									S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	V	R	M	T	D	S	G	R	R	V	R	F	R	V	L	A	A	V	G	N	R	D	G	Y	V	G	L	G	I	G	H	G	K	E	V	G	I	A	I	R	K	A	I	N	Y	A	K	L	N	I	I	E	I	K	R	G	C	G	S	W	E	C	R	C	R	R	P	H	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T															T	T	T										S	S															S							B	S	S		S	S	S			S	S			B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	P	F	A	V	E	G	K	E	G	S	V	R	V	R	L	I	P	G	P	R	G	L	G	L	V	I	G	D	V	G	K	K	I	L	R	L	A	G	V	Q	D	V	W	S	Q	T	F	G	E	T	R	T	T	V	N	F	A	K	A	V	F	N	A	L	Y	N	T	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S							T	T										S	S				B	S												T										S			S
	.	.	.	.	.	.	.
Sequence	V	A	I	S	P	E	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			T	T	T