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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2bf1A_

Fold library idPDB HeaderMoleculeTitle
c2bf1A_PDB header: virus proteinChain: A: PDB Molecule: exterior membrane glycoprotein gp120;PDBTitle: structure of an unliganded and fully-glycosylated siv gp1202 envelope glycoprotein


Added to library: Tue Mar 16 14:05:17 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HMELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCIGAGHCNTSIIQESCFRYCAPPGYA
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S
SSS

TT

SS




SSSSS











S
TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence LLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTM
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Known secondary structure (DSSP) B



SSS


SS







B



GGGSSSS

SS

SS




B

TTB
B

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence KCRGAGWCWFGGNWKDAIKEMKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMWTNCRGEFLYCKMNW
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Known secondary structure (DSSP) TTT
TTSSS


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SS




SS


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence FLNWVEDRDVTNQRPKERHRRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGN
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Known secondary structure (DSSP) TT




SS


SSS









B


SSB

SSSS

B






SS




B



B

SSS
 .........290.........300....
Sequence QTNITMSAEVAELYRLELGDYKLV
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Known secondary structure (DSSP)






SSS

B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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