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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3dnlB_ | PDB header: viral protein | Chain: B: PDB Molecule: hiv-1 envelope glycoprotein gp120; | PDBTitle: molecular structure for the hiv-1 gp120 trimer in the b12-2 bound state |
Added to library: Tue Mar 16 12:30:16 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | T | S | V | I | T | Q | A | C | P | K | V | S | F | E | P | I | P | I | H | Y | C | A | P | A | G | F | A | I | L | K | C | N | N | K | T | F | N | G | T | G | P | C | T | N | V | S | T | V | Q | C | T | H | G | I | R | P | V | V | S | T | Q | L | L | L | N | G | S | L | A | E |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | B | B | S | S | ![]() | ![]() | ![]() | ![]() | T | T | S | S | S | S | S | ![]() | ![]() | ![]() | ![]() | S | B | B | B | S | S | S | S | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | E | E | V | V | I | R | S | V | N | F | T | D | N | A | K | T | I | I | V | Q | L | N | T | S | V | E | I | N | C | T | G | A | G | H | C | N | I | S | R | A | K | W | N | N | T | L | K | Q | I | A | S | K | L | R | E | Q | F | G | N | N | K | T | I | I | F | K | Q | S | S | G |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | ![]() | ![]() | ![]() | S | S | S | S | T | T | S | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | ![]() | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 |
Sequence | G | D | P | E | I | V | T | H | S | F | N | C | G | G | E | F | F | Y | C | N | S | T | Q | L | F | N | S | T | W | F | ||||||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | T | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | S | ![]() | ![]() | ![]() |
Download: | PDB structure | FASTA sequence |
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