PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2xzmE_

Fold library id	PDB Header	Molecule	Title
c2xzmE_	PDB header: ribosome	Chain: E: PDB Molecule: ribosomal protein s5 containing protein;	PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1

Links to external resources
Added to library: Sat Jan 22 08:45:38 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K N D W Q P Q T K L G R L V K Y G K I S S L D E I F K Y S I P I K E P E I I D H F Y P K N K D V Q A E H K L M E E V L Q I T P V Q K Q T Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S
T T
S S
T T
S
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G Q R T R F K G F V V V G D S N G H I G L G W K V A K E V Q G A I K G A I T H A K L N M V P V R K G Y W G N K I A N A H T I P Q K I T G K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S T
B
S S S
S S
B
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G S V R I R L V P A P R G T G I V A A P I P K K V L Q F A G V Q D I Y T S S Q G C T R T R G N F L K A T Y Y A L A N T Y R Y L T P D F W G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
B S
T T T
S
S
S
T T T
S

. . . . . . . . . 220 . . . . . . . . . 230

Sequence P E D N E L P F E T F S E F L H T K A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	N	D	W	Q	P	Q	T	K	L	G	R	L	V	K	Y	G	K	I	S	S	L	D	E	I	F	K	Y	S	I	P	I	K	E	P	E	I	I	D	H	F	Y	P	K	N	K	D	V	Q	A	E	H	K	L	M	E	E	V	L	Q	I	T	P	V	Q	K	Q	T	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S							T	T		S									T	T						S							S		T	T			S			T	T																	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	Q	R	T	R	F	K	G	F	V	V	V	G	D	S	N	G	H	I	G	L	G	W	K	V	A	K	E	V	Q	G	A	I	K	G	A	I	T	H	A	K	L	N	M	V	P	V	R	K	G	Y	W	G	N	K	I	A	N	A	H	T	I	P	Q	K	I	T	G	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	T										S	S															T							B		S	S	S			S	S			B		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	S	V	R	I	R	L	V	P	A	P	R	G	T	G	I	V	A	A	P	I	P	K	K	V	L	Q	F	A	G	V	Q	D	I	Y	T	S	S	Q	G	C	T	R	T	R	G	N	F	L	K	A	T	Y	Y	A	L	A	N	T	Y	R	Y	L	T	P	D	F	W	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T										S	S				B	S										T	T	T										S			S																			S			T	T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	P	E	D	N	E	L	P	F	E	T	F	S	E	F	L	H	T	K	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	G	G	G	S	T	T