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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: d1yymg1

Fold library idFoldSuperfamilyFamily
d1yymg1gp120 coregp120 coregp120 core


Added to library: Tue Mar 16 13:10:00 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVGAGSCNTSVITQACPKVSFEPIPIHYCA
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Known secondary structure (DSSP)




GGG
S

S
TTS












B

B
 .........80.........90.........100.........110.........120.........130.........140
Sequence PAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLN
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Known secondary structure (DSSP)
TT

TT

SSSSB


B



BSSS



SSS

S
TT
TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ESVVINCTGAGHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNST
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Known secondary structure (DSSP) TTT
TTS





SSTT

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence QLFTWNDRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGD
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Known secondary structure (DSSP) GGG



S
SSSSS



SSSS




S
SS


S
 .........290........
Sequence MRDNWRSELYKYKVVKIE
Predicted secondary structure


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Known secondary structure (DSSP) TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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