Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	V	N	F	F	V	T	C	I	G	D	A	L	K	S	R	M	A	R	D	S	V	L	L	L	E	K	L	G	C	R	V	N	F	P	E	K	Q	G	C	C	G	Q	P	A	I	N	S	G	Y	I	K	E	A	I	P	G	M	K
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	L	I	A	A	L	E	D	N	D	D	P	I	I	S	P	A	G	S	C	T	Y	A	V	K	S	Y	P	T	Y	L	A	D	E	P	E	W	A	S	R	A	A	K	V	A	A	R	M	Q	D	L	T	S	F	I	V	N	K	L	G
Secondary structure
SS confidence
Disorder																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	V	D	V	G	A	S	L	Q	G	R	A	V	Y	H	P	S	C	S	L	A	R	K	L	G	V	K	D	E	P	L	T	L	L	K	N	V	R	G	L	E	L	L	T	F	A	E	Q	D	T	C	C	G	F	G	G	T	F	S	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence		K	M	A	E	I	S	G	E	M	V	K	E	K	V	A	H	L	M	E	V	R	P	E	Y	L	I	G	A	D	V	S	C	L	L	N	I	S	G	R	L	Q	R	E	G	Q	K	V	K	V	M	H	I	A	E	V	L	M	S	R
Secondary structure
SS confidence
Disorder																																												?	?												?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3kwl chain A Region: 4 - 237 Aligned: 220 Modelled: 234 Confidence: 99.9% Identity: 11% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori Phyre2 PDB 3ojc chain D Region: 46 - 239 Aligned: 168 Modelled: 176 Confidence: 92.0% Identity: 14% PDB header:isomerase Chain: D: PDB Molecule:putative aspartate/glutamate racemase; PDBTitle: crystal structure of a putative asp/glu racemase from yersinia pestis Phyre2 PDB 3s81 chain A Region: 1 - 239 Aligned: 215 Modelled: 239 Confidence: 91.0% Identity: 9% PDB header:isomerase Chain: A: PDB Molecule:putative aspartate racemase; PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium Phyre2 PDB 2dx7 chain B Region: 44 - 239 Aligned: 169 Modelled: 183 Confidence: 90.1% Identity: 18% PDB header:isomerase Chain: B: PDB Molecule:aspartate racemase; PDBTitle: crystal structure of pyrococcus horikoshii ot3 aspartate racemase2 complex with citric acid Phyre2 PDB 3out chain C Region: 129 - 238 Aligned: 100 Modelled: 110 Confidence: 89.9% Identity: 12% PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. Phyre2 PDB 2zsk chain A Region: 52 - 238 Aligned: 160 Modelled: 169 Confidence: 87.1% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:226aa long hypothetical aspartate racemase; PDBTitle: crystal structure of ph1733, an aspartate racemase2 homologue, from pyrococcus horikoshii ot3 Phyre2 PDB 3hfr chain A Region: 127 - 234 Aligned: 96 Modelled: 108 Confidence: 78.4% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes Phyre2 PDB 1b74 chain A Region: 130 - 234 Aligned: 94 Modelled: 105 Confidence: 78.4% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus Phyre2 PDB 2jfo chain B Region: 129 - 234 Aligned: 95 Modelled: 106 Confidence: 77.9% Identity: 18% PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate Phyre2 PDB 1jfl chain A domain 1 Region: 187 - 238 Aligned: 50 Modelled: 52 Confidence: 77.1% Identity: 10% Fold: ATC-like Superfamily: Aspartate/glutamate racemase Family: Aspartate/glutamate racemase Phyre2 PDB 2dwu chain A Region: 129 - 234 Aligned: 95 Modelled: 106 Confidence: 76.1% Identity: 14% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis Phyre2 PDB 2jfq chain A Region: 129 - 234 Aligned: 95 Modelled: 106 Confidence: 73.9% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate Phyre2 PDB 2jfz chain B Region: 130 - 234 Aligned: 94 Modelled: 105 Confidence: 73.7% Identity: 17% PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor Phyre2 PDB 2gzm chain B Region: 127 - 234 Aligned: 97 Modelled: 108 Confidence: 70.1% Identity: 14% PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis Phyre2 PDB 2oho chain A Region: 129 - 234 Aligned: 95 Modelled: 106 Confidence: 69.3% Identity: 11% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: structural basis for glutamate racemase inhibitor Phyre2 PDB 1zuw chain A Region: 129 - 234 Aligned: 94 Modelled: 106 Confidence: 66.9% Identity: 12% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu Phyre2 PDB 1vk8 chain A Region: 17 - 76 Aligned: 54 Modelled: 60 Confidence: 64.4% Identity: 13% Fold: Ferredoxin-like Superfamily: MTH1187/YkoF-like Family: MTH1187-like Phyre2 PDB 1b74 chain A domain 1 Region: 130 - 234 Aligned: 94 Modelled: 105 Confidence: 53.6% Identity: 15% Fold: ATC-like Superfamily: Aspartate/glutamate racemase Family: Aspartate/glutamate racemase Phyre2 PDB 2eq5 chain D Region: 146 - 234 Aligned: 81 Modelled: 89 Confidence: 50.4% Identity: 6% PDB header:isomerase Chain: D: PDB Molecule:228aa long hypothetical hydantoin racemase; PDBTitle: crystal structure of hydantoin racemase from pyrococcus horikoshii ot3 Phyre2 PDB 3c8y chain A domain 1 Region: 19 - 142 Aligned: 108 Modelled: 124 Confidence: 50.2% Identity: 15% Fold: Fe-only hydrogenase Superfamily: Fe-only hydrogenase Family: Fe-only hydrogenase Phyre2 1 c3kwlA_ 2 c3ojcD_ 3 c3s81A_ 4 c2dx7B_ 5 c3outC_ 6 c2zskA_ 7 c3hfrA_ 8 c1b74A_ 9 c2jfoB_ 10 d1jfla1 11 c2dwuA_ 12 c2jfqA_ 13 c2jfzB_ 14 c2gzmB_ 15 c2ohoA_ 16 c1zuwA_ 17 d1vk8a_ 18 d1b74a1 19 c2eq5D_ 20 d3c8ya1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3kwlA_ 99.9 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori 2 c3ojcD_ 92.0 14 PDB header:isomerase Chain: D: PDB Molecule:putative aspartate/glutamate racemase; PDBTitle: crystal structure of a putative asp/glu racemase from yersinia pestis 3 c3s81A_ 91.0 9 PDB header:isomerase Chain: A: PDB Molecule:putative aspartate racemase; PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium 4 c2dx7B_ 90.1 18 PDB header:isomerase Chain: B: PDB Molecule:aspartate racemase; PDBTitle: crystal structure of pyrococcus horikoshii ot3 aspartate racemase2 complex with citric acid 5 c3outC_ 89.9 12 PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. 6 c2zskA_ 87.1 15 PDB header:unknown function Chain: A: PDB Molecule:226aa long hypothetical aspartate racemase; PDBTitle: crystal structure of ph1733, an aspartate racemase2 homologue, from pyrococcus horikoshii ot3 7 c3hfrA_ 78.4 13 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes 8 c1b74A_ 78.4 15 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus 9 c2jfoB_ 77.9 18 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate 10 d1jfla1 77.1 10 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 11 c2dwuA_ 76.1 14 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis 12 c2jfqA_ 73.9 15 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate 13 c2jfzB_ 73.7 17 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor 14 c2gzmB_ 70.1 14 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis 15 c2ohoA_ 69.3 11 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: structural basis for glutamate racemase inhibitor 16 c1zuwA_ 66.9 12 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu 17 d1vk8a_ 64.4 13 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 18 d1b74a1 53.6 15 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 19 c2eq5D_ 50.4 6 PDB header:isomerase Chain: D: PDB Molecule:228aa long hypothetical hydantoin racemase; PDBTitle: crystal structure of hydantoin racemase from pyrococcus horikoshii ot3 20 d3c8ya1 50.2 15 Fold:Fe-only hydrogenase Superfamily:Fe-only hydrogenase Family:Fe-only hydrogenase 21 c2epiA_ not modelled 49.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0045 protein mj1052; PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2) 22 c1c4cA_ not modelled 46.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 23 c3lx4B_ not modelled 45.2 14 PDB header:oxidoreductase Chain: B: PDB Molecule:fe-hydrogenase; PDBTitle: stepwise [fefe]-hydrogenase h-cluster assembly revealed in the2 structure of hyda(deltaefg) 24 d1lxja_ not modelled 44.1 7 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 25 c3hlyA_ not modelled 42.3 16 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 26 d1hfel1 not modelled 40.9 11 Fold:Fe-only hydrogenase Superfamily:Fe-only hydrogenase Family:Fe-only hydrogenase 27 d2a9va1 not modelled 39.1 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 28 c3qvjB_ not modelled 38.8 10 PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae 29 d2iboa1 not modelled 38.7 9 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 30 d1jfla2 not modelled 37.8 17 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 31 c3cf4A_ not modelled 37.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 32 c2jfnA_ not modelled 35.4 12 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala 33 c1hfeL_ not modelled 34.3 11 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 34 d1yqha1 not modelled 32.3 11 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 35 d2fzva1 not modelled 31.5 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 36 c1gx7A_ not modelled 29.4 11 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 37 c1x0lB_ not modelled 25.5 19 PDB header:oxidoreductase Chain: B: PDB Molecule:homoisocitrate dehydrogenase; PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus 38 d3pmga1 not modelled 24.9 16 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 39 c3fniA_ not modelled 22.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 40 d2dx7a1 not modelled 21.3 17 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 41 d1xaca_ not modelled 20.9 24 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 42 c2ct6A_ not modelled 20.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like PDBTitle: solution structure of the sh3 domain-binding glutamic acid-2 rich-like protein 2 43 c1u6tA_ not modelled 20.2 12 PDB header:protein binding, signaling protein Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like PDBTitle: crystal structure of the human sh3 binding glutamic-rich2 protein like 44 d1lxna_ not modelled 19.8 16 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 45 d1kfia1 not modelled 19.1 16 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 46 c2fb6A_ not modelled 17.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of conserved protein of unknown function bt1422 from2 bacteroides thetaiotaomicron 47 c3blxL_ not modelled 17.2 13 PDB header:oxidoreductase Chain: L: PDB Molecule:isocitrate dehydrogenase [nad] subunit 2; PDBTitle: yeast isocitrate dehydrogenase (apo form) 48 d1z2wa1 not modelled 16.2 13 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 49 c3blxM_ not modelled 15.5 13 PDB header:oxidoreductase Chain: M: PDB Molecule:isocitrate dehydrogenase [nad] subunit 1; PDBTitle: yeast isocitrate dehydrogenase (apo form) 50 c3rh0A_ not modelled 15.3 22 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2 51 d1rtta_ not modelled 15.3 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 52 d2auna2 not modelled 15.3 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 53 c3l3bA_ not modelled 14.0 20 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 54 c3ijfX_ not modelled 13.5 11 PDB header:hydrolase Chain: X: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis 55 c3h75A_ not modelled 13.1 11 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 56 c3onoA_ not modelled 12.3 17 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 57 d1j09a2 not modelled 11.9 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 58 c3gjzB_ not modelled 11.7 18 PDB header:immune system Chain: B: PDB Molecule:microcin immunity protein mccf; PDBTitle: crystal structure of microcin immunity protein mccf from bacillus2 anthracis str. ames 59 d2bisa1 not modelled 11.7 20 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 60 c3c8nB_ not modelled 11.3 8 PDB header:oxidoreductase Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis 61 c2jr7A_ not modelled 11.0 23 PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1 62 d1w0da_ not modelled 11.0 16 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 63 c1c4gB_ not modelled 10.6 16 PDB header:transferase Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate PDBTitle: phosphoglucomutase vanadate based transition state analog2 complex 64 c2dgdD_ not modelled 10.0 10 PDB header:lyase Chain: D: PDB Molecule:223aa long hypothetical arylmalonate decarboxylase; PDBTitle: crystal structure of st0656, a function unknown protein from2 sulfolobus tokodaii 65 d1wgea1 not modelled 9.9 19 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 66 c3o1hB_ not modelled 9.9 19 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 67 d1fjha_ not modelled 9.9 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 68 c2vlbC_ not modelled 9.6 13 PDB header:lyase Chain: C: PDB Molecule:arylmalonate decarboxylase; PDBTitle: structure of unliganded arylmalonate decarboxylase 69 c1zrsB_ not modelled 9.5 14 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: wild-type ld-carboxypeptidase 70 c2fzvC_ not modelled 9.5 8 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 71 d1h75a_ not modelled 9.3 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 72 c3afhA_ not modelled 9.1 12 PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase 2; PDBTitle: crystal structure of thermotoga maritima nondiscriminating glutamyl-2 trna synthetase in complex with a glutamyl-amp analog 73 c3u1hA_ not modelled 9.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase; PDBTitle: crystal structure of ipmdh from the last common ancestor of bacillus 74 d1rbli_ not modelled 9.1 7 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 75 c2wlbB_ not modelled 8.3 13 PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria 76 c3lcmB_ not modelled 8.2 9 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 77 c2z0fA_ not modelled 8.2 14 PDB header:isomerase Chain: A: PDB Molecule:putative phosphoglucomutase; PDBTitle: crystal structure of putative phosphoglucomutase from thermus2 thermophilus hb8 78 d1pn3a_ not modelled 8.2 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 79 c2x49A_ not modelled 8.2 16 PDB header:protein transport Chain: A: PDB Molecule:invasion protein inva; PDBTitle: crystal structure of the c-terminal domain of inva 80 c3na7A_ not modelled 8.2 12 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 81 c2gejA_ not modelled 8.1 14 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 82 c2ppwA_ not modelled 7.6 10 PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae 83 c3h7hA_ not modelled 7.6 17 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 84 d1r7ha_ not modelled 7.6 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 85 c3c4vB_ not modelled 7.6 20 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 86 c3he8A_ not modelled 7.3 18 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 87 c3ikzA_ not modelled 7.3 8 PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of phosphopantetheine adenylyltransferase from2 burkholderia pseudomallei 88 d1b43a2 not modelled 7.0 20 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 89 d1g2ua_ not modelled 7.0 21 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 90 c2fuvB_ not modelled 6.9 23 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucomutase; PDBTitle: phosphoglucomutase from salmonella typhimurium. 91 c3c5yD_ not modelled 6.9 11 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 92 d2d30a1 not modelled 6.9 11 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 93 d1coza_ not modelled 6.9 7 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Cytidylyltransferase 94 c2jadA_ not modelled 6.9 7 PDB header:electron transport Chain: A: PDB Molecule:yellow fluorescent protein glutaredoxin fusion PDBTitle: yellow fluorescent protein - glutaredoxin fusion protein 95 c3nbmA_ not modelled 6.7 18 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 96 c3dmoD_ not modelled 6.7 14 PDB header:hydrolase Chain: D: PDB Molecule:cytidine deaminase; PDBTitle: 1.6 a crystal structure of cytidine deaminase from2 burkholderia pseudomallei 97 c3orsD_ not modelled 6.6 13 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 98 d8abpa_ not modelled 6.5 13 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 99 c3fmfA_ not modelled 6.5 11 PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0