Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	H	S	S	V	K	R	W	G	N	S	P	A	V	R	I	P	A	T	L	M	Q	A	L	N	L	N	I	D	D	E	V	K	I	D	L	V	D	G	K	L	I	I	E	P	V	R	K	E	P	V	F	T	L	A	E	L	V	N
Secondary structure
SS confidence
Disorder		?	?																																					?	?							?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Sequence		D	I	T	P	E	N	L	H	E	N	I	D	W	G	E	P	K	D	K	E	V	W
Secondary structure
SS confidence
Disorder						?		?				?	?	?			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ub4 chain C Region: 2 - 76 Aligned: 75 Modelled: 75 Confidence: 100.0% Identity: 100% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 1mvf chain D Region: 4 - 47 Aligned: 44 Modelled: 44 Confidence: 99.7% Identity: 100% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 3zvk chain G Region: 3 - 82 Aligned: 75 Modelled: 80 Confidence: 99.0% Identity: 16% PDB header:antitoxin/toxin/dna Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb; PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter Phyre2 PDB 3tnd chain F Region: 3 - 61 Aligned: 51 Modelled: 59 Confidence: 98.4% Identity: 29% PDB header:translation, toxin Chain: F: PDB Molecule:antitoxin vapb; PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex Phyre2 PDB 1yfb chain A domain 1 Region: 15 - 50 Aligned: 36 Modelled: 36 Confidence: 97.0% Identity: 28% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: AbrB N-terminal domain-like Phyre2 PDB 2fy9 chain A domain 1 Region: 15 - 50 Aligned: 36 Modelled: 36 Confidence: 96.9% Identity: 22% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: AbrB N-terminal domain-like Phyre2 PDB 2w1t chain B Region: 15 - 54 Aligned: 40 Modelled: 40 Confidence: 96.5% Identity: 20% PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt Phyre2 PDB 2l66 chain B Region: 15 - 48 Aligned: 34 Modelled: 34 Confidence: 96.2% Identity: 24% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. Phyre2 PDB 2ro5 chain B Region: 15 - 53 Aligned: 39 Modelled: 39 Confidence: 95.7% Identity: 21% PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt Phyre2 PDB 3o27 chain B Region: 15 - 44 Aligned: 30 Modelled: 30 Confidence: 94.2% Identity: 27% PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx Phyre2 PDB 2glw chain A Region: 6 - 39 Aligned: 34 Modelled: 34 Confidence: 93.3% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii Phyre2 PDB 2pjh chain B Region: 10 - 44 Aligned: 34 Modelled: 35 Confidence: 85.2% Identity: 24% PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex Phyre2 PDB 2d9r chain A domain 1 Region: 3 - 38 Aligned: 36 Modelled: 36 Confidence: 85.1% Identity: 17% Fold: Double-split beta-barrel Superfamily: AF2212/PG0164-like Family: PG0164-like Phyre2 PDB 1cz5 chain A Region: 10 - 36 Aligned: 26 Modelled: 27 Confidence: 81.9% Identity: 35% PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) Phyre2 PDB 1cz5 chain A domain 1 Region: 15 - 36 Aligned: 22 Modelled: 22 Confidence: 78.9% Identity: 32% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Cdc48 N-terminal domain-like Phyre2 PDB 2iv2 chain X domain 1 Region: 9 - 45 Aligned: 37 Modelled: 37 Confidence: 69.1% Identity: 16% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 2jio chain A domain 1 Region: 15 - 45 Aligned: 31 Modelled: 31 Confidence: 63.7% Identity: 13% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 2vbu chain A domain 1 Region: 15 - 39 Aligned: 25 Modelled: 25 Confidence: 62.0% Identity: 28% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin kinase-like Family: CTP-dependent riboflavin kinase-like Phyre2 PDB 1e32 chain A domain 1 Region: 10 - 36 Aligned: 27 Modelled: 27 Confidence: 62.0% Identity: 22% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Cdc48 N-terminal domain-like Phyre2 PDB 1h0h chain A domain 1 Region: 15 - 45 Aligned: 31 Modelled: 31 Confidence: 61.5% Identity: 23% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 1 d1ub4c_ 2 d1mvfd_ 3 c3zvkG_ 4 c3tndF_ 5 d1yfba1 6 d2fy9a1 7 c2w1tB_ 8 c2l66B_ 9 c2ro5B_ 10 c3o27B_ 11 c2glwA_ 12 c2pjhB_ 13 d2d9ra1 14 c1cz5A_ 15 d1cz5a1 16 d2iv2x1 17 d2jioa1 18 d2vbua1 19 d1e32a1 20 d1h0ha1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ub4c_ 100.0 100 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 2 d1mvfd_ 99.7 100 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 3 c3zvkG_ 99.0 16 PDB header:antitoxin/toxin/dna Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb; PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter 4 c3tndF_ 98.4 29 PDB header:translation, toxin Chain: F: PDB Molecule:antitoxin vapb; PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex 5 d1yfba1 97.0 28 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 6 d2fy9a1 96.9 22 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 7 c2w1tB_ 96.5 20 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 8 c2l66B_ 96.2 24 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 9 c2ro5B_ 95.7 21 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt 10 c3o27B_ 94.2 27 PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx 11 c2glwA_ 93.3 21 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 12 c2pjhB_ 85.2 24 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 13 d2d9ra1 85.1 17 Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like 14 c1cz5A_ 81.9 35 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 15 d1cz5a1 78.9 32 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 16 d2iv2x1 69.1 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 17 d2jioa1 63.7 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 18 d2vbua1 62.0 28 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 19 d1e32a1 62.0 22 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 20 d1h0ha1 61.5 23 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 21 c1wlfA_ not modelled 60.2 24 PDB header:protein transport Chain: A: PDB Molecule:peroxisome biogenesis factor 1; PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain 22 d1vlfm1 not modelled 57.8 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 23 d1g8ka1 not modelled 57.5 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 24 c2iv2X_ not modelled 57.4 16 PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli 25 d1ogya1 not modelled 55.0 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 26 d1kqfa1 not modelled 54.1 30 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 27 d1eu1a1 not modelled 54.0 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 28 d1zq1a1 not modelled 52.4 22 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 29 c2ki8A_ not modelled 52.1 26 PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7 30 d1dmra1 not modelled 52.0 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 31 d1tmoa1 not modelled 51.8 23 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 32 d1y5ia1 not modelled 45.1 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 33 c2v45A_ not modelled 44.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand 34 c1g8jC_ not modelled 42.6 13 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 35 c3cf1C_ not modelled 40.3 24 PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx 36 c1h9mB_ not modelled 39.8 11 PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound 37 d3d31a1 not modelled 38.0 12 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 38 c1vlfQ_ not modelled 36.6 16 PDB header:oxidoreductase Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici complexed3 with inhibitor 1,2,4,5-tetrahydroxy-benzene 39 c2nyaF_ not modelled 34.3 26 PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli 40 c2e7zA_ not modelled 33.3 16 PDB header:lyase Chain: A: PDB Molecule:acetylene hydratase ahy; PDBTitle: acetylene hydratase from pelobacter acetylenicus 41 c1kqgA_ not modelled 32.3 30 PDB header:oxidoreductase Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit; PDBTitle: formate dehydrogenase n from e. coli 42 c2dxbR_ not modelled 32.2 28 PDB header:hydrolase Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma; PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers 43 c1tmoA_ not modelled 31.4 23 PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia 44 c3hu2C_ not modelled 30.0 24 PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97 n-d1 r86a mutant in complex with atpgs 45 c1eu1A_ not modelled 29.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments. 46 d1ylea1 not modelled 29.5 19 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:AstA-like 47 c1h5nC_ not modelled 29.5 13 PDB header:oxidoreductase Chain: C: PDB Molecule:dmso reductase; PDBTitle: dmso reductase modified by the presence of dms and air 48 d1v29a_ not modelled 28.7 29 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 49 c1ogyA_ not modelled 27.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides 50 c2k5hA_ not modelled 27.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 51 d2d6fa1 not modelled 27.7 11 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 52 c1s3sA_ not modelled 27.3 24 PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c 53 c1h0hA_ not modelled 27.2 21 PDB header:dehydrogenase Chain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas 54 c1y5iA_ not modelled 24.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain; PDBTitle: the crystal structure of the narghi mutant nari-k86a 55 d1wlfa2 not modelled 24.3 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 56 c2he4A_ not modelled 23.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf2; PDBTitle: the crystal structure of the second pdz domain of human2 nherf-2 (slc9a3r2) interacting with a mode 1 pdz binding3 motif 57 c3qyhG_ not modelled 22.9 20 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 58 d2i6va1 not modelled 22.6 27 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like 59 d1h9ma1 not modelled 21.6 17 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 60 c3qglD_ not modelled 21.6 10 PDB header:protein binding Chain: D: PDB Molecule:sorting nexin-27; PDBTitle: crystal structure of pdz domain of sorting nexin 27 (snx27) in complex2 with the eseskv peptide corresponding to the c-terminal tail of girk3 61 c2fugC_ not modelled 21.3 13 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 62 d1fr3a_ not modelled 20.5 16 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 63 c2qt7B_ not modelled 20.2 17 PDB header:hydrolase Chain: B: PDB Molecule:receptor-type tyrosine-protein phosphatase-like PDBTitle: crystallographic structure of the mature ectodomain of the2 human receptor-type protein-tyrosine phosphatase ia-2 at3 1.30 angstroms 64 d1h9ma2 not modelled 20.2 11 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 65 d2qdya1 not modelled 19.7 21 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 66 d2i4sa1 not modelled 19.0 27 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like 67 c2ivfA_ not modelled 18.5 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 68 c3idwA_ not modelled 18.5 27 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 69 c3d31B_ not modelled 16.8 11 PDB header:transport protein Chain: B: PDB Molecule:sulfate/molybdate abc transporter, atp-binding PDBTitle: modbc from methanosarcina acetivorans 70 d1iz6a2 not modelled 15.9 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 71 d1guta_ not modelled 15.6 17 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 72 c1uheA_ not modelled 14.8 19 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 73 d1h9ra1 not modelled 14.4 31 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 74 c3mhxB_ not modelled 14.4 17 PDB header:metal transport Chain: B: PDB Molecule:putative ferrous iron transport protein a; PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor 75 c2k5lA_ not modelled 14.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:feoa; PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17 76 c2vpyE_ not modelled 14.0 26 PDB header:oxidoreductase Chain: E: PDB Molecule:thiosulfate reductase; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 77 d1a62a2 not modelled 14.0 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 78 d1yela1 not modelled 13.4 17 Fold:DNA-binding pseudobarrel domain Superfamily:DNA-binding pseudobarrel domain Family:B3 DNA binding domain 79 c2bkdN_ not modelled 13.2 33 PDB header:nuclear protein Chain: N: PDB Molecule:fragile x mental retardation 1 protein; PDBTitle: structure of the n-terminal domain of fragile x mental2 retardation protein 80 c2jxoA_ not modelled 13.1 19 PDB header:protein binding Chain: A: PDB Molecule:ezrin-radixin-moesin-binding phosphoprotein 50; PDBTitle: structure of the second pdz domain of nherf-1 81 c2jilA_ not modelled 12.8 19 PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor interacting protein-1; PDBTitle: crystal structure of 2nd pdz domain of glutamate receptor2 interacting protein-1 (grip1) 82 d1qw1a1 not modelled 12.5 23 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 83 d1x5qa1 not modelled 12.4 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 84 c3plxB_ not modelled 12.0 23 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 85 c3pjyB_ not modelled 11.8 13 PDB header:transcription regulator Chain: B: PDB Molecule:hypothetical signal peptide protein; PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution 86 d1udxa3 not modelled 11.8 25 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 87 c1vc3B_ not modelled 11.3 16 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 88 d2byga1 not modelled 11.3 25 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 89 c1zeqX_ not modelled 11.0 12 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 90 d1zoka1 not modelled 10.9 29 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 91 c2kl0A_ not modelled 10.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 92 c1zc1A_ not modelled 10.9 21 PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites 93 d1d5ga_ not modelled 10.9 22 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 94 c2c45F_ not modelled 10.9 32 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 95 c1qw1A_ not modelled 10.8 23 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226 96 d1qvpa_ not modelled 10.7 21 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 97 c1pt1B_ not modelled 10.0 13 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 98 d2gkpa1 not modelled 10.0 42 Fold:NMB0488-like Superfamily:NMB0488-like Family:NMB0488-like 99 c3ougA_ not modelled 9.9 13 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0