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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1s3sA_

Fold library idPDB HeaderMoleculeTitle
c1s3sA_PDB header: protein bindingChain: A: PDB Molecule: transitional endoplasmic reticulum atpase (terPDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c


Added to library: Tue Mar 16 12:28:13 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNL
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Known secondary structure (DSSP)




SS

TT
T

TT

STT

SSS
TT

T
 .........80.........90.........100.........110.........120.........130.........140
Sequence RVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVE
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Known secondary structure (DSSP) T

TT

TT

SBTT
BS
TTTT

TT
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKA
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Known secondary structure (DSSP) SSSS

TT


S

B


TT


TTS

GGG

S

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIF
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Known secondary structure (DSSP)







STTSST
TS
TTT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP
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Known secondary structure (DSSP) TGGGT


SSS


TT

GGG
S
GGGS
GGGTSTTSS




 .........360.........370.........380.........390.........400.........410.........420
Sequence DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM
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Known secondary structure (DSSP)
TTTTS
TT

TT

S

TTTTT
SS


B
 .........430......
Sequence NSLAVTMDDFRWALSQ
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Known secondary structure (DSSP)




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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