Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	N	A	T	F	Y	L	L	D	N	D	T	T	V	D	G	L	S	A	V	E	Q	L	V	C	E	I	A	A	E	R	W	R	S	G	K	R	V	L	I	A	C	E	D	E	K	Q	A	Y	R	L	D	E	A	L	W	A	R	P
Secondary structure
SS confidence
Disorder		?	?	?										?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	E	S	F	V	P	H	N	L	A	G	E	G	P	R	G	G	A	P	V	E	I	A	W	P	Q	K	R	S	S	S	R	R	D	I	L	I	S	L	R	T	S	F	A	D	F	A	T	A	F	T	E	V	V	D	F	V	P	Y	E
Secondary structure
SS confidence
Disorder													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Sequence		D	S	L	K	Q	L	A	R	E	R	Y	K	A	Y	R	V	A	G	F	N	L	N	T	A	T	W	K
Secondary structure
SS confidence
Disorder																							?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1em8 chain A Region: 1 - 147 Aligned: 147 Modelled: 147 Confidence: 100.0% Identity: 100% Fold: DNA polymerase III chi subunit Superfamily: DNA polymerase III chi subunit Family: DNA polymerase III chi subunit Phyre2 PDB 1c4o chain A domain 2 Region: 19 - 110 Aligned: 92 Modelled: 92 Confidence: 80.7% Identity: 14% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 2j17 chain A Region: 1 - 45 Aligned: 44 Modelled: 45 Confidence: 80.2% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase yil113w; PDBTitle: ptyr bound form of sdp-1 Phyre2 PDB 2img chain A Region: 4 - 45 Aligned: 42 Modelled: 42 Confidence: 78.7% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 23; PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion Phyre2 PDB 1tf5 chain A domain 4 Region: 17 - 68 Aligned: 52 Modelled: 52 Confidence: 78.1% Identity: 17% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1t5l chain A domain 2 Region: 19 - 108 Aligned: 90 Modelled: 90 Confidence: 77.2% Identity: 14% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1fuk chain A Region: 5 - 110 Aligned: 96 Modelled: 106 Confidence: 76.2% Identity: 8% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1nkt chain A domain 4 Region: 17 - 56 Aligned: 40 Modelled: 40 Confidence: 69.0% Identity: 25% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 3rgq chain A Region: 4 - 43 Aligned: 40 Modelled: 40 Confidence: 67.5% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1; PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p Phyre2 PDB 3hgt chain A Region: 19 - 56 Aligned: 38 Modelled: 38 Confidence: 62.2% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex Phyre2 PDB 1fpz chain F Region: 4 - 43 Aligned: 40 Modelled: 40 Confidence: 62.0% Identity: 10% PDB header:hydrolase Chain: F: PDB Molecule:cyclin-dependent kinase inhibitor 3; PDBTitle: crystal structure analysis of kinase associated phosphatase2 (kap) with a substitution of the catalytic site cysteine3 (cys140) to a serine Phyre2 PDB 2p4d chain A Region: 11 - 45 Aligned: 35 Modelled: 35 Confidence: 61.3% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: structure-assisted discovery of variola major h12 phosphatase inhibitors Phyre2 PDB 1nl3 chain B Region: 17 - 72 Aligned: 52 Modelled: 56 Confidence: 61.0% Identity: 25% PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form Phyre2 PDB 2esb chain A Region: 12 - 45 Aligned: 34 Modelled: 34 Confidence: 57.1% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 18; PDBTitle: crystal structure of human dusp18 Phyre2 PDB 1fpz chain A Region: 4 - 45 Aligned: 42 Modelled: 42 Confidence: 56.5% Identity: 10% Fold: (Phosphotyrosine protein) phosphatases II Superfamily: (Phosphotyrosine protein) phosphatases II Family: Dual specificity phosphatase-like Phyre2 PDB 1t5i chain A Region: 6 - 56 Aligned: 43 Modelled: 51 Confidence: 53.1% Identity: 16% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1yz4 chain A Region: 6 - 45 Aligned: 40 Modelled: 40 Confidence: 52.6% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a; PDBTitle: crystal structure of dusp15 Phyre2 PDB 3dl8 chain B Region: 17 - 56 Aligned: 40 Modelled: 40 Confidence: 49.5% Identity: 20% PDB header:protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca Phyre2 PDB 1gm5 chain A domain 4 Region: 19 - 112 Aligned: 94 Modelled: 94 Confidence: 49.2% Identity: 13% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1tf2 chain A Region: 17 - 56 Aligned: 40 Modelled: 40 Confidence: 49.1% Identity: 20% PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis Phyre2 1 d1em8a_ 2 d1c4oa2 3 c2j17A_ 4 c2imgA_ 5 d1tf5a4 6 d1t5la2 7 d1fuka_ 8 d1nkta4 9 c3rgqA_ 10 c3hgtA_ 11 c1fpzF_ 12 c2p4dA_ 13 c1nl3B_ 14 c2esbA_ 15 d1fpza_ 16 d1t5ia_ 17 c1yz4A_ 18 c3dl8B_ 19 d1gm5a4 20 c1tf2A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1em8a_ 100.0 100 Fold:DNA polymerase III chi subunit Superfamily:DNA polymerase III chi subunit Family:DNA polymerase III chi subunit 2 d1c4oa2 80.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 3 c2j17A_ 80.2 7 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase yil113w; PDBTitle: ptyr bound form of sdp-1 4 c2imgA_ 78.7 17 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 23; PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion 5 d1tf5a4 78.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 6 d1t5la2 77.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 7 d1fuka_ 76.2 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 8 d1nkta4 69.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 9 c3rgqA_ 67.5 15 PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1; PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p 10 c3hgtA_ 62.2 13 PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex 11 c1fpzF_ 62.0 10 PDB header:hydrolase Chain: F: PDB Molecule:cyclin-dependent kinase inhibitor 3; PDBTitle: crystal structure analysis of kinase associated phosphatase2 (kap) with a substitution of the catalytic site cysteine3 (cys140) to a serine 12 c2p4dA_ 61.3 20 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: structure-assisted discovery of variola major h12 phosphatase inhibitors 13 c1nl3B_ 61.0 25 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form 14 c2esbA_ 57.1 15 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 18; PDBTitle: crystal structure of human dusp18 15 d1fpza_ 56.5 10 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 16 d1t5ia_ 53.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 17 c1yz4A_ 52.6 10 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a; PDBTitle: crystal structure of dusp15 18 c3dl8B_ 49.5 20 PDB header:protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 19 d1gm5a4 49.2 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 20 c1tf2A_ 49.1 20 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis 21 d2eyqa2 not modelled 48.4 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 22 c2vdaA_ not modelled 45.9 19 PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex 23 c2vbcA_ not modelled 45.4 26 PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus 24 c2hcmA_ not modelled 45.4 16 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: crystal structure of mouse putative dual specificity phosphatase2 complexed with zinc tungstate, new york structural genomics3 consortium 25 c2hk8B_ not modelled 44.5 18 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution 26 d1oywa3 not modelled 44.1 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 27 c1wrmA_ not modelled 41.8 15 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 22; PDBTitle: crystal structure of jsp-1 28 c3juxA_ not modelled 41.7 17 PDB header:protein transport Chain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima 29 c2oudA_ not modelled 41.4 24 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of the catalytic domain of human mkp5 30 c3dinB_ not modelled 36.5 18 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 31 d1jr6a_ not modelled 35.6 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase 32 c2jmkA_ not modelled 35.4 19 PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein ta0956; PDBTitle: solution structure of ta0956 33 c1zzwA_ not modelled 34.7 23 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of catalytic domain of human map kinase2 phosphatase 5 34 c1p74B_ not modelled 34.6 11 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from2 haemophilus influenzae 35 c3dmdA_ not modelled 34.6 22 PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus 36 c3i32A_ not modelled 34.5 14 PDB header:rna binding protein,hydrolase Chain: A: PDB Molecule:heat resistant rna dependent atpase; PDBTitle: dimeric structure of a hera helicase fragment including the c-terminal2 reca domain, the dimerization domain, and the rna binding domain 37 c1ii0A_ not modelled 33.9 25 PDB header:hydrolase Chain: A: PDB Molecule:arsenical pump-driving atpase; PDBTitle: crystal structure of the escherichia coli arsenite-translocating2 atpase 38 d1ihua1 not modelled 33.5 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 39 c2wv9A_ not modelled 32.9 18 PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus 40 c2wgpA_ not modelled 32.8 9 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 14; PDBTitle: crystal structure of human dual specificity phosphatase 14 41 c2eyqA_ not modelled 32.7 13 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor 42 c2qeqA_ not modelled 31.6 20 PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit; PDBTitle: crystal structure of kunjin virus ns3 helicase 43 d1m3ga_ not modelled 30.8 22 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 44 c3emuA_ not modelled 30.0 11 PDB header:hydrolase Chain: A: PDB Molecule:leucine rich repeat and phosphatase domain PDBTitle: crystal structure of a leucine rich repeat and phosphatase2 domain containing protein from entamoeba histolytica 45 d1t5la1 not modelled 29.9 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 46 d1mkpa_ not modelled 29.1 14 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 47 c2nt2C_ not modelled 28.5 13 PDB header:hydrolase Chain: C: PDB Molecule:protein phosphatase slingshot homolog 2; PDBTitle: crystal structure of slingshot phosphatase 2 48 c3nmeA_ not modelled 27.6 12 PDB header:hydrolase Chain: A: PDB Molecule:sex4 glucan phosphatase; PDBTitle: structure of a plant phosphatase 49 c2fsgA_ not modelled 26.5 21 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli 50 d1xo1a2 not modelled 25.6 10 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 51 c2g6zB_ not modelled 25.3 18 PDB header:hydrolase Chain: B: PDB Molecule:dual specificity protein phosphatase 5; PDBTitle: crystal structure of human dusp5 52 c3d4oA_ not modelled 24.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit a; PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution 53 c3e59A_ not modelled 24.2 11 PDB header:transferase Chain: A: PDB Molecule:pyoverdine biosynthesis protein pvca; PDBTitle: crystal structure of the pvca (pa2254) protein from pseudomonas2 aeruginosa 54 d2eyqa5 not modelled 24.0 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 55 c2j37W_ not modelled 22.7 22 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 56 d1tfra2 not modelled 22.4 15 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 57 c1gl9B_ not modelled 21.5 13 PDB header:topoisomerase Chain: B: PDB Molecule:reverse gyrase; PDBTitle: archaeoglobus fulgidus reverse gyrase complexed with adpnp 58 c2iy3A_ not modelled 20.4 16 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 59 d1fx0a3 not modelled 20.4 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 60 d2g2ja1 not modelled 20.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 61 c2r0bA_ not modelled 19.6 17 PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein; PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein 62 c3dm5A_ not modelled 19.0 19 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 63 c1rrzA_ not modelled 18.9 16 PDB header:structural genomics,biosynthetic protein Chain: A: PDB Molecule:glycogen synthesis protein glgs; PDBTitle: solution structure of glgs protein from e. coli 64 d1rrza_ not modelled 18.9 16 Fold:Spectrin repeat-like Superfamily:Glycogen synthesis protein GlgS Family:Glycogen synthesis protein GlgS 65 d2jdia3 not modelled 18.1 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 66 c2z83A_ not modelled 17.6 18 PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 67 d1z5za1 not modelled 17.5 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 68 d2p6ra4 not modelled 17.1 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 69 c2cnwF_ not modelled 17.0 16 PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy 70 d1cmwa2 not modelled 16.5 16 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 71 d1j8yf2 not modelled 16.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 72 c1gm5A_ not modelled 15.6 14 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 73 d2j0sa2 not modelled 14.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 74 d2a90a1 not modelled 14.9 5 Fold:WWE domain Superfamily:WWE domain Family:WWE domain 75 c2x0dA_ not modelled 14.7 7 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 76 d1pjca1 not modelled 14.7 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 77 d1z3ix1 not modelled 13.8 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 78 c1zu4A_ not modelled 13.6 25 PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212 79 c1vmaA_ not modelled 13.5 22 PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution 80 c2ihnA_ not modelled 13.5 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate 81 c2pqmA_ not modelled 13.5 18 PDB header:lyase Chain: A: PDB Molecule:cysteine synthase; PDBTitle: crystal structure of cysteine synthase (oass) from entamoeba2 histolytica at 1.86 a resolution 82 c2j7pA_ not modelled 13.4 16 PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy 83 d1hv8a2 not modelled 13.3 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 84 c3ia7A_ not modelled 13.0 14 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 85 c2hjvB_ not modelled 12.7 14 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase dbpa; PDBTitle: structure of the second domain (residues 207-368) of the2 bacillus subtilis yxin protein 86 c2ipcB_ not modelled 12.3 25 PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer 87 c1j8yF_ not modelled 12.1 16 PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant 88 d1b74a1 not modelled 12.0 16 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 89 c2v6jA_ not modelled 11.9 24 PDB header:hydrolase Chain: A: PDB Molecule:rna helicase; PDBTitle: kokobera virus helicase: mutant met47thr 90 d1skyb3 not modelled 11.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 91 d2b2na1 not modelled 11.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 92 d2pd4a1 not modelled 11.6 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 93 c3bxzA_ not modelled 11.4 18 PDB header:transport protein Chain: A: PDB Molecule:preprotein translocase subunit seca; PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca 94 c1zq1B_ not modelled 11.0 28 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 95 c2qsdB_ not modelled 11.0 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of a protein il1583 from idiomarina loihiensis 96 d1t6t1_ not modelled 10.8 9 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 97 c3u62A_ not modelled 10.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from thermotoga maritima 98 c3b9qA_ not modelled 10.4 25 PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana 99 c3fshC_ not modelled 10.1 55 PDB header:ligase Chain: C: PDB Molecule:autocrine motility factor receptor, isoform 2; PDBTitle: crystal structure of the ubiquitin conjugating enzyme2 ube2g2 bound to the g2br domain of ubiquitin ligase gp78

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0