PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3u62A_

Fold library id	PDB Header	Molecule	Title
c3u62A_	PDB header: oxidoreductase	Chain: A: PDB Molecule: shikimate dehydrogenase;	PDBTitle: crystal structure of shikimate dehydrogenase from thermotoga maritima

Links to external resources
Added to library: Sat Nov 19 19:45:12 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K F C I I G Y P V R H S I S P R L Y N E Y F K R A G M N H S Y G M E E I P P E S F D T E I R R I L E E Y D G F N A T I P H K E R V M R Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S T
G G G
S
T T
T T G G G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E P S E D A Q R I K A V N C V F R G K G Y N T D W V G V V K S L E G V E V K E P V V V V G A G G A A R A V I Y A L L Q M G V K D I W V V N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
T T T
S S
S T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T I E R A K A L D F P V K I F S L D Q L D E V V K K A K S L F N T T S V G M K G E E L P V S D D S L K N L S L V Y D V I Y F D T P L V V K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
G G G T
S
S S T T T T S
S
T T
S
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . .

Sequence R K L G V K H I I K G N L M F Y Y Q A M E N L K I W G I Y D E E V F K E V F G E V L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T T
G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	F	C	I	I	G	Y	P	V	R	H	S	I	S	P	R	L	Y	N	E	Y	F	K	R	A	G	M	N	H	S	Y	G	M	E	E	I	P	P	E	S	F	D	T	E	I	R	R	I	L	E	E	Y	D	G	F	N	A	T	I	P	H	K	E	R	V	M	R	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S		T	T		S													T												G	G	G													S						T	T		T	T	G	G	G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	P	S	E	D	A	Q	R	I	K	A	V	N	C	V	F	R	G	K	G	Y	N	T	D	W	V	G	V	V	K	S	L	E	G	V	E	V	K	E	P	V	V	V	V	G	A	G	G	A	A	R	A	V	I	Y	A	L	L	Q	M	G	V	K	D	I	W	V	V	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T							T	T														T	T	T					S	S							S													T	T									S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	I	E	R	A	K	A	L	D	F	P	V	K	I	F	S	L	D	Q	L	D	E	V	V	K	K	A	K	S	L	F	N	T	T	S	V	G	M	K	G	E	E	L	P	V	S	D	D	S	L	K	N	L	S	L	V	Y	D	V	I	Y	F	D	T	P	L	V	V	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T			S	S						G	G	G							T		S						S	S	T	T	T	T	S				S							T	T		S						S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence	R	K	L	G	V	K	H	I	I	K	G	N	L	M	F	Y	Y	Q	A	M	E	N	L	K	I	W	G	I	Y	D	E	E	V	F	K	E	V	F	G	E	V	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T		S					T															T	T												G	G	G	G