Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77182
DateThu Jan 5 12:26:05 GMT 2012
Unique Job IDce278ba12cba2769

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3ps9A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli
Confidence and coverage
Confidence:100.0% Coverage: 99%
660 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLF
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Disorder  ???????




















































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   .........70.........80.........90.........100.........110.........120
Sequence  VVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPEL
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?????





























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   .........130.........140.........150.........160.........170.........180
Sequence  APWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGF
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   .........190.........200.........210.........220.........230.........240
Sequence  APAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREML
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???
?
?
?

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   .........250.........260.........270.........280.........290.........300
Sequence  CGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPA
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??
?



































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   .........310.........320.........330.........340.........350.........360
Sequence  LGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVKFDHDWCGVTQLGWDEKS
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Disorder 
?

























































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   .........370.........380.........390.........400.........410.........420
Sequence  QHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQ
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   .........430.........440.........450.........460.........470.........480
Sequence  QQGLQIYYQYQLQNLSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTSTLPVYSVA
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?







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   .........490.........500.........510.........520.........530.........540
Sequence  GQVSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNRQ
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Disorder 








??
?































?













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   .........550.........560.........570.........580.........590.........600
Sequence  RLIDCFPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEA
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?????????
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   .........610.........620.........630.........640.........650.........660
Sequence  VSAPVFDDLFMFAALGSRGLCSAPLCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLL
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Disorder  ??

























































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   ........
Sequence  KGKAVKAG
Secondary structure 







SS confidence 







Disorder  ????????
Disorder confidence 







 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3ps9 chain A

3D model

Region: 1 - 663
Aligned: 660
Modelled: 663
Confidence: 100.0%
Identity: 100%
PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli

Phyre2

PDB 3pvc chain A

3D model

Region: 29 - 662
Aligned: 632
Modelled: 634
Confidence: 100.0%
Identity: 60%
PDB header:oxidoreductase, transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of apo mnmc from yersinia pestis

Phyre2

PDB 2qy6 chain A

3D model

Region: 1 - 245
Aligned: 243
Modelled: 245
Confidence: 100.0%
Identity: 98%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0209 protein yfck;
PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7

Phyre2

PDB 2e58 chain D

3D model

Region: 10 - 250
Aligned: 215
Modelled: 241
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: D: PDB Molecule:mnmc2;
PDBTitle: crystal structure of mnmc2 from aquifex aeolicus

Phyre2

PDB 1pj6 chain A

3D model

Region: 263 - 654
Aligned: 354
Modelled: 367
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid

Phyre2

PDB 2gah chain B

3D model

Region: 249 - 667
Aligned: 384
Modelled: 395
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution

Phyre2

PDB 1y56 chain B

3D model

Region: 262 - 660
Aligned: 363
Modelled: 376
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:sarcosine oxidase;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii

Phyre2

PDB 3dje chain A

3D model

Region: 262 - 668
Aligned: 377
Modelled: 383
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa

Phyre2

PDB 3bhk chain A

3D model

Region: 262 - 658
Aligned: 363
Modelled: 374
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:monomeric sarcosine oxidase;
PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant

Phyre2

PDB 2uzz chain D

3D model

Region: 264 - 654
Aligned: 361
Modelled: 368
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)

Phyre2

PDB 3nye chain A

3D model

Region: 262 - 654
Aligned: 361
Modelled: 370
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine

Phyre2

PDB 3dme chain B

3D model

Region: 263 - 635
Aligned: 350
Modelled: 357
Confidence: 100.0%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141

Phyre2

PDB 2oln chain A

3D model

Region: 266 - 652
Aligned: 355
Modelled: 366
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution

Phyre2

PDB 1ryi chain B

3D model

Region: 262 - 653
Aligned: 353
Modelled: 369
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine oxidase;
PDBTitle: structure of glycine oxidase with bound inhibitor glycolate

Phyre2

PDB 1c0i chain A

3D model

Region: 262 - 636
Aligned: 349
Modelled: 362
Confidence: 100.0%
Identity: 12%
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-amino acid oxidase;
PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules

Phyre2

PDB 1kif chain E

3D model

Region: 266 - 634
Aligned: 317
Modelled: 334
Confidence: 100.0%
Identity: 13%
PDB header:flavoprotein
Chain: E: PDB Molecule:d-amino acid oxidase;
PDBTitle: d-amino acid oxidase from pig kidney

Phyre2

PDB 2r4j chain A

3D model

Region: 266 - 636
Aligned: 350
Modelled: 366
Confidence: 100.0%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap

Phyre2

PDB 2rgo chain A

3D model

Region: 263 - 634
Aligned: 352
Modelled: 372
Confidence: 100.0%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase

Phyre2

PDB 2rgh chain A

3D model

Region: 263 - 634
Aligned: 338
Modelled: 341
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase

Phyre2

PDB 2gf3 chain A domain 1

3D model

Region: 262 - 658
Aligned: 275
Modelled: 280
Confidence: 100.0%
Identity: 17%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2
1

c3ps9A_
2

c3pvcA_
3

c2qy6A_
4

c2e58D_
5

c1pj6A_
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c2gahB_
7

c1y56B_
8

c3djeA_
9

c3bhkA_
10

c2uzzD_
11

c3nyeA_
12

c3dmeB_
13

c2olnA_
14

c1ryiB_
15

c1c0iA_
16

c1kifE_
17

c2r4jA_
18

c2rgoA_
19

c2rghA_
20

d2gf3a1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ps9A_



100.0 100 PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli
2c3pvcA_



100.0 60 PDB header:oxidoreductase, transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of apo mnmc from yersinia pestis
3c2qy6A_



100.0 98 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0209 protein yfck;
PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7
4c2e58D_



100.0 27 PDB header:transferase
Chain: D: PDB Molecule:mnmc2;
PDBTitle: crystal structure of mnmc2 from aquifex aeolicus
5c1pj6A_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
6c2gahB_



100.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution
7c1y56B_



100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:sarcosine oxidase;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
8c3djeA_



100.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
9c3bhkA_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:monomeric sarcosine oxidase;
PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant
10c2uzzD_



100.0 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)
11c3nyeA_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine
12c3dmeB_



100.0 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141
13c2olnA_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution
14c1ryiB_



100.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine oxidase;
PDBTitle: structure of glycine oxidase with bound inhibitor glycolate
15c1c0iA_



100.0 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-amino acid oxidase;
PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules
16c1kifE_



100.0 13 PDB header:flavoprotein
Chain: E: PDB Molecule:d-amino acid oxidase;
PDBTitle: d-amino acid oxidase from pig kidney
17c2r4jA_



100.0 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap
18c2rgoA_



100.0 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
19c2rghA_



100.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
20d2gf3a1



100.0 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
21c3da1A_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
22d1ryia1



not modelled 100.0 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
23d1pj5a2



not modelled 99.9 11 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
24d1c0pa1



not modelled 99.9 14 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
25d1kifa1



not modelled 99.9 17 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
26c3i6dA_



not modelled 99.8 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: crystal structure of ppo from bacillus subtilis with af
27c3ka7A_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
28c1ltxR_



not modelled 99.8 14 PDB header:transferase/protein binding
Chain: R: PDB Molecule:rab escort protein 1;
PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
29c2ardA_



not modelled 99.7 14 PDB header:biosynthetic protein
Chain: A: PDB Molecule:tryptophan halogenase prna;
PDBTitle: the structure of tryptophan 7-halogenase (prna) suggests a mechanism2 for regioselective chlorination
30c2weuD_



not modelled 99.7 13 PDB header:antifungal protein
Chain: D: PDB Molecule:tryptophan 5-halogenase;
PDBTitle: crystal structure of tryptophan 5-halogenase (pyrh) complex2 with substrate tryptophan
31c3i3lA_



not modelled 99.7 17 PDB header:hydrolase
Chain: A: PDB Molecule:alkylhalidase cmls;
PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
32d1o5wa1



not modelled 99.7 11 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
33c2pyxA_



not modelled 99.6 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:tryptophan halogenase;
PDBTitle: crystal structure of tryptophan halogenase (yp_750003.1) from2 shewanella frigidimarina ncimb 400 at 1.50 a resolution
34c2e4gB_



not modelled 99.6 15 PDB header:biosynthetic protein, flavoprotein
Chain: B: PDB Molecule:tryptophan halogenase;
PDBTitle: rebh with bound l-trp
35c3atrA_



not modelled 99.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand
36c2ivdA_



not modelled 99.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen
37c3nixF_



not modelled 99.6 12 PDB header:oxidoreductase
Chain: F: PDB Molecule:flavoprotein/dehydrogenase;
PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43.
38c2qa2A_



not modelled 99.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyketide oxygenase cabe;
PDBTitle: crystal structure of cabe, an aromatic hydroxylase from angucycline2 biosynthesis, determined to 2.7 a resolution
39d2gqfa1



not modelled 99.5 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
40c3e1tA_



not modelled 99.5 19 PDB header:flavoprotein
Chain: A: PDB Molecule:halogenase;
PDBTitle: structure and action of the myxobacterial chondrochloren2 halogenase cndh, a new variant of fad-dependent halogenases
41c3nksA_



not modelled 99.5 15 PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: structure of human protoporphyrinogen ix oxidase
42d1d5ta1



not modelled 99.5 12 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
43c1phhA_



not modelled 99.5 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:p-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of p-hydroxybenzoate hydroxylase complexed with its2 reaction product 3,4-dihydroxybenzoate
44c3fmwC_



not modelled 99.5 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:oxygenase;
PDBTitle: the crystal structure of mtmoiv, a baeyer-villiger2 monooxygenase from the mithramycin biosynthetic pathway in3 streptomyces argillaceus.
45c2gmhA_



not modelled 99.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
46c3cgvA_



not modelled 99.5 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:geranylgeranyl reductase related protein;
PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution
47c3allA_



not modelled 99.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase;
PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a
48c1yq4A_



not modelled 99.5 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
49c3k7tB_



not modelled 99.5 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:6-hydroxy-l-nicotine oxidase;
PDBTitle: crystal structure of apo-form 6-hydroxy-l-nicotine oxidase,2 crystal form p3121
50c2bs3A_



not modelled 99.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a;
PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes
51c1s3bB_



not modelled 99.5 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase [flavin-containing] b;
PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
52c2aczA_



not modelled 99.4 14 PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
53d2i0za1



not modelled 99.4 12 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
54c2xagA_



not modelled 99.4 14 PDB header:transcription
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine
55c1yvvB_



not modelled 99.4 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase, flavin-containing;
PDBTitle: x-ray structurure of p. syringae q888a4 oxidoreductase at2 resolution 2.5a. northeast structural genomics consortium3 target psr10.
56c3lovA_



not modelled 99.4 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: crystal structure of putative protoporphyrinogen oxidase2 (yp_001813199.1) from exiguobacterium sp. 255-15 at 2.06 a resolution
57c1jrxA_



not modelled 99.4 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
58c2xdoC_



not modelled 99.4 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:tetx2 protein;
PDBTitle: structure of the tetracycline degrading monooxygenase tetx2 from2 bacteroides thetaiotaomicron
59c3gmbB_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid
PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic2 acid oxygenase
60d2bcgg1



not modelled 99.4 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
61c1qo8A_



not modelled 99.4 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase;
PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
62c1ps9A_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
63d2bs2a2



not modelled 99.4 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
64c2dkhA_



not modelled 99.4 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of 3-hydroxybenzoate hydroxylase from comamonas2 testosteroni, in complex with the substrate
65d1y0pa2



not modelled 99.4 13 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
66c1gndA_



not modelled 99.4 17 PDB header:gtpase activation
Chain: A: PDB Molecule:guanine nucleotide dissociation inhibitor;
PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform
67d1neka2



not modelled 99.4 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
68c1h83A_



not modelled 99.3 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyamine oxidase;
PDBTitle: structure of polyamine oxidase in complex with2 1,8-diaminooctane
69d1qo8a2



not modelled 99.3 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
70c2vouA_



not modelled 99.3 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,6-dihydroxypyridine hydroxylase;
PDBTitle: structure of 2,6-dihydroxypyridine-3-hydroxylase from2 arthrobacter nicotinovorans
71c1d4cB_



not modelled 99.3 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:flavocytochrome c fumarate reductase;
PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1
72d1kf6a2



not modelled 99.3 13 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
73c3nrnA_



not modelled 99.3 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pf1083;
PDBTitle: crystal structure of pf1083 protein from pyrococcus furiosus,2 northeast structural genomics consortium target pfr223
74c3cpiH_



not modelled 99.3 15 PDB header:protein transport
Chain: H: PDB Molecule:rab gdp-dissociation inhibitor;
PDBTitle: crystal structure of yeast rab-gdi
75c2zxiC_



not modelled 99.3 16 PDB header:fad-binding protein
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: structure of aquifex aeolicus gida in the form ii crystal
76c3v76A_



not modelled 99.3 15 PDB header:flavoprotein
Chain: A: PDB Molecule:flavoprotein;
PDBTitle: the crystal structure of a flavoprotein from sinorhizobium meliloti
77c1pn0A_



not modelled 99.3 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:phenol 2-monooxygenase;
PDBTitle: phenol hydroxylase from trichosporon cutaneum
78c3p4rM_



not modelled 99.3 14 PDB header:oxidoreductase
Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit;
PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate
79c3ihgA_



not modelled 99.3 14 PDB header:flavoprotein, oxidoreductase
Chain: A: PDB Molecule:rdme;
PDBTitle: crystal structure of a ternary complex of aklavinone-112 hydroxylase with fad and aklavinone
80c2b9yA_



not modelled 99.3 14 PDB header:isomerase
Chain: A: PDB Molecule:putative aminooxidase;
PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes
81d2v5za1



not modelled 99.3 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
82c1kf6A_



not modelled 99.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase flavoprotein;
PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
83d2voua1



not modelled 99.2 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
84c3qj4A_



not modelled 99.2 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:renalase;
PDBTitle: crystal structure of human renalase (isoform 1)
85c3nlcA_



not modelled 99.2 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vp0956;
PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147
86c3cp8C_



not modelled 99.2 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: crystal structure of gida from chlorobium tepidum
87c3k30B_



not modelled 99.2 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
88d1vg0a1



not modelled 99.2 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
89c2eq7B_



not modelled 99.2 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
90d1k0ia1



not modelled 99.2 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
91c3g05B_



not modelled 99.2 18 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
92c2rgjA_



not modelled 99.2 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing monooxygenase;
PDBTitle: crystal structure of flavin-containing monooxygenase phzs
93c3cesB_



not modelled 99.2 18 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
94c2e5vA_



not modelled 99.2 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate oxidase;
PDBTitle: crystal structure of l-aspartate oxidase from2 hyperthermophilic archaeon sulfolobus tokodaii
95d1w4xa1



not modelled 99.2 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
96c2x3nA_



not modelled 99.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable fad-dependent monooxygenase;
PDBTitle: crystal structure of pqsl, a probable fad-dependent2 monooxygenase from pseudomonas aeruginosa
97c3o0hA_



not modelled 99.1 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase from bartonella henselae
98c2i0zA_



not modelled 99.1 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-utilizing dehydrogenases;
PDBTitle: crystal structure of a fad binding protein from bacillus2 cereus, a putative nad(fad)-utilizing dehydrogenases
99c1f8sA_



not modelled 99.1 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-amino acid oxidase;
PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate.
100d1d4ca2



not modelled 99.1 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
101c3c4aA_



not modelled 99.1 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable tryptophan hydroxylase viod;
PDBTitle: crystal structure of viod hydroxylase in complex with fad2 from chromobacterium violaceum. northeast structural3 genomics consortium target cvr158
102c3jskN_



not modelled 99.1 20 PDB header:biosynthetic protein
Chain: N: PDB Molecule:cypbp37 protein;
PDBTitle: thiazole synthase from neurospora crassa
103d1ryia2



not modelled 99.1 15 Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:D-aminoacid oxidase-like
104d2dw4a2



not modelled 99.1 22 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
105c1w4xA_



not modelled 99.1 18 PDB header:oxygenase
Chain: A: PDB Molecule:phenylacetone monooxygenase;
PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase
106c1xdiA_



not modelled 99.1 17 PDB header:unknown function
Chain: A: PDB Molecule:rv3303c-lpda;
PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis
107d2gmha1



not modelled 99.1 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
108c2vvlD_



not modelled 99.1 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:monoamine oxidase n;
PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger.
109c2r0gB_



not modelled 99.1 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:rebc;
PDBTitle: chromopyrrolic acid-soaked rebc with bound 7-carboxy-k252c
110c2gqfA_



not modelled 99.1 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0933;
PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd
111c2v1dA_



not modelled 99.1 20 PDB header:oxidoreductase/repressor
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
112c2hkoA_



not modelled 99.1 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: crystal structure of lsd1
113c1vqwB_



not modelled 99.1 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein with similarity to flavin-containing
PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases
114c2jb1B_



not modelled 99.1 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:l-amino acid oxidase;
PDBTitle: the l-amino acid oxidase from rhodococcus opacus in complex2 with l-alanine
115c1zx9A_



not modelled 99.1 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: crystal structure of tn501 mera
116c3dgzA_



not modelled 99.1 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2;
PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
117c2w0hA_



not modelled 99.1 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase;
PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph
118c2yg4B_



not modelled 99.1 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:putrescine oxidase;
PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine
119c1zkqA_



not modelled 99.1 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial;
PDBTitle: crystal structure of mouse thioredoxin reductase type 2
120c2e1mA_



not modelled 99.1 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-glutamate oxidase;
PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0