Phyre 2 Results for P77182

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Email | l.a.kelley@imperial.ac.uk
Description | P77182
Date | Thu Jan 5 12:26:05 GMT 2012
Unique Job ID | ce278ba12cba2769

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3ps9A_
Top template information
PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
660 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | H | Y | S | I | Q | P | A | N | L | E | F | N | A | E | G | T | P | V | S | R | D | F | D | D | V | Y | F | S | N | D | N | G | L | E | E | T | R | Y | V | F | L | G | G | N | Q | L | E | V | R | F | P | E | H | P | H | P | L | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | V | A | E | S | G | F | G | T | G | L | N | F | L | T | L | W | Q | A | F | D | Q | F | R | E | A | H | P | Q | A | Q | L | Q | R | L | H | F | I | S | F | E | K | F | P | L | T | R | A | D | L | A | L | A | H | Q | H | W | P | E | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | P | W | A | E | Q | L | Q | A | Q | W | P | M | P | L | P | G | C | H | R | L | L | L | D | E | G | R | V | T | L | D | L | W | F | G | D | I | N | E | L | T | S | Q | L | D | D | S | L | N | Q | K | V | D | A | W | F | L | D | G | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | A | P | A | K | N | P | D | M | W | T | Q | N | L | F | N | A | M | A | R | L | A | R | P | G | G | T | L | A | T | F | T | S | A | G | F | V | R | R | G | L | Q | D | A | G | F | T | M | Q | K | R | K | G | F | G | R | K | R | E | M | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? |  | ? |  | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | C | G | V | M | E | Q | T | L | P | L | P | C | S | A | P | W | F | N | R | T | G | S | S | K | R | E | A | A | I | I | G | G | G | I | A | S | A | L | L | S | L | A | L | L | R | R | G | W | Q | V | T | L | Y | C | A | D | E | A | P | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | L | G | A | S | G | N | R | Q | G | A | L | Y | P | L | L | S | K | H | D | E | A | L | N | R | F | F | S | N | A | F | T | F | A | R | R | F | Y | D | Q | L | P | V | K | F | D | H | D | W | C | G | V | T | Q | L | G | W | D | E | K | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | Q | H | K | I | A | Q | M | L | S | M | D | L | P | A | E | L | A | V | A | V | E | A | N | A | V | E | Q | I | T | G | V | A | T | N | C | S | G | I | T | Y | P | Q | G | G | W | L | C | P | A | E | L | T | R | N | V | L | E | L | A | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | Q | Q | G | L | Q | I | Y | Y | Q | Y | Q | L | Q | N | L | S | R | K | D | D | C | W | L | L | N | F | A | G | D | Q | Q | A | T | H | S | V | V | V | L | A | N | G | H | Q | I | S | R | F | S | Q | T | S | T | L | P | V | Y | S | V | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | G | Q | V | S | H | I | P | T | T | P | E | L | A | E | L | K | Q | V | L | C | Y | D | G | Y | L | T | P | Q | N | P | A | N | Q | H | H | C | I | G | A | S | Y | H | R | G | S | E | D | T | A | Y | S | E | D | D | Q | Q | Q | N | R | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | R | L | I | D | C | F | P | Q | A | Q | W | A | K | E | V | D | V | S | D | K | E | A | R | C | G | V | R | C | A | T | R | D | H | L | P | M | V | G | N | V | P | D | Y | E | A | T | L | V | E | Y | A | S | L | A | E | Q | K | D | E | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660
Sequence |  | V | S | A | P | V | F | D | D | L | F | M | F | A | A | L | G | S | R | G | L | C | S | A | P | L | C | A | E | I | L | A | A | Q | M | S | D | E | P | I | P | M | D | A | S | T | L | A | A | L | N | P | N | R | L | W | V | R | K | L | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | .
Sequence |  | K | G | K | A | V | K | A | G
Secondary structure |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3ps9A_ |

### PDB 3ps9 chain A

Region: 1 - 663
Aligned: 660
Modelled: 663
Confidence: 100.0%
Identity: 100%
PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli

Phyre2
2 |
| c3pvcA_ |

### PDB 3pvc chain A

Region: 29 - 662
Aligned: 632
Modelled: 634
Confidence: 100.0%
Identity: 60%
PDB header:oxidoreductase, transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of apo mnmc from yersinia pestis

Phyre2
3 |
| c2qy6A_ |

### PDB 2qy6 chain A

Region: 1 - 245
Aligned: 243
Modelled: 245
Confidence: 100.0%
Identity: 98%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0209 protein yfck;
PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7

Phyre2
4 |
| c2e58D_ |

### PDB 2e58 chain D

Region: 10 - 250
Aligned: 215
Modelled: 241
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: D: PDB Molecule:mnmc2;
PDBTitle: crystal structure of mnmc2 from aquifex aeolicus

Phyre2
5 |
| c1pj6A_ |

### PDB 1pj6 chain A

Region: 263 - 654
Aligned: 354
Modelled: 367
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid

Phyre2
6 |
| c2gahB_ |

### PDB 2gah chain B

Region: 249 - 667
Aligned: 384
Modelled: 395
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution

Phyre2
7 |
| c1y56B_ |

### PDB 1y56 chain B

Region: 262 - 660
Aligned: 363
Modelled: 376
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:sarcosine oxidase;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii

Phyre2
8 |
| c3djeA_ |

### PDB 3dje chain A

Region: 262 - 668
Aligned: 377
Modelled: 383
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa

Phyre2
9 |
| c3bhkA_ |

### PDB 3bhk chain A

Region: 262 - 658
Aligned: 363
Modelled: 374
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:monomeric sarcosine oxidase;
PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant

Phyre2
10 |
| c2uzzD_ |

### PDB 2uzz chain D

Region: 264 - 654
Aligned: 361
Modelled: 368
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)

Phyre2
11 |
| c3nyeA_ |

### PDB 3nye chain A

Region: 262 - 654
Aligned: 361
Modelled: 370
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine

Phyre2
12 |
| c3dmeB_ |

### PDB 3dme chain B

Region: 263 - 635
Aligned: 350
Modelled: 357
Confidence: 100.0%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141

Phyre2
13 |
| c2olnA_ |

### PDB 2oln chain A

Region: 266 - 652
Aligned: 355
Modelled: 366
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution

Phyre2
14 |
| c1ryiB_ |

### PDB 1ryi chain B

Region: 262 - 653
Aligned: 353
Modelled: 369
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine oxidase;
PDBTitle: structure of glycine oxidase with bound inhibitor glycolate

Phyre2
15 |
| c1c0iA_ |

### PDB 1c0i chain A

Region: 262 - 636
Aligned: 349
Modelled: 362
Confidence: 100.0%
Identity: 12%
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-amino acid oxidase;
PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules

Phyre2
16 |
| c1kifE_ |

### PDB 1kif chain E

Region: 266 - 634
Aligned: 317
Modelled: 334
Confidence: 100.0%
Identity: 13%
PDB header:flavoprotein
Chain: E: PDB Molecule:d-amino acid oxidase;
PDBTitle: d-amino acid oxidase from pig kidney

Phyre2
17 |
| c2r4jA_ |

### PDB 2r4j chain A

Region: 266 - 636
Aligned: 350
Modelled: 366
Confidence: 100.0%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap

Phyre2
18 |
| c2rgoA_ |

### PDB 2rgo chain A

Region: 263 - 634
Aligned: 352
Modelled: 372
Confidence: 100.0%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase

Phyre2
19 |
| c2rghA_ |

### PDB 2rgh chain A

Region: 263 - 634
Aligned: 338
Modelled: 341
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase

Phyre2
20 |
| d2gf3a1 |

### PDB 2gf3 chain A domain 1

Region: 262 - 658
Aligned: 275
Modelled: 280
Confidence: 100.0%
Identity: 17%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3ps9A_ |
|  | 100.0 | 100 | PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli
2 | c3pvcA_ |
|  | 100.0 | 60 | PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis
3 | c2qy6A_ |
|  | 100.0 | 98 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7
4 | c2e58D_ |
|  | 100.0 | 27 | PDB header:transferase Chain: D: PDB Molecule:mnmc2; PDBTitle: crystal structure of mnmc2 from aquifex aeolicus
5 | c1pj6A_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:n,n-dimethylglycine oxidase; PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
6 | c2gahB_ |
|  | 100.0 | 14 | PDB header:oxidoreductase Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit; PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution
7 | c1y56B_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:sarcosine oxidase; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
8 | c3djeA_ |
|  | 100.0 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase; PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
9 | c3bhkA_ |
|  | 100.0 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:monomeric sarcosine oxidase; PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant
10 | c2uzzD_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase; PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)
11 | c3nyeA_ |
|  | 100.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine
12 | c3dmeB_ |
|  | 100.0 | 14 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141
13 | c2olnA_ |
|  | 100.0 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:nikd protein; PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution
14 | c1ryiB_ |
|  | 100.0 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:glycine oxidase; PDBTitle: structure of glycine oxidase with bound inhibitor glycolate
15 | c1c0iA_ |
|  | 100.0 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:d-amino acid oxidase; PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules
16 | c1kifE_ |
|  | 100.0 | 13 | PDB header:flavoprotein Chain: E: PDB Molecule:d-amino acid oxidase; PDBTitle: d-amino acid oxidase from pig kidney
17 | c2r4jA_ |
|  | 100.0 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap
18 | c2rgoA_ |
|  | 100.0 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
19 | c2rghA_ |
|  | 100.0 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
20 | d2gf3a1 |
|  | 100.0 | 17 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
21 | c3da1A_ |
| not modelled | 100.0 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
22 | d1ryia1 |
| not modelled | 100.0 | 17 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
23 | d1pj5a2 |
| not modelled | 99.9 | 11 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
24 | d1c0pa1 |
| not modelled | 99.9 | 14 | Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain
25 | d1kifa1 |
| not modelled | 99.9 | 17 | Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain
26 | c3i6dA_ |
| not modelled | 99.8 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of ppo from bacillus subtilis with af
27 | c3ka7A_ |
| not modelled | 99.8 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
28 | c1ltxR_ |
| not modelled | 99.8 | 14 | PDB header:transferase/protein binding Chain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
29 | c2ardA_ |
| not modelled | 99.7 | 14 | PDB header:biosynthetic protein Chain: A: PDB Molecule:tryptophan halogenase prna; PDBTitle: the structure of tryptophan 7-halogenase (prna) suggests a mechanism2 for regioselective chlorination
30 | c2weuD_ |
| not modelled | 99.7 | 13 | PDB header:antifungal protein Chain: D: PDB Molecule:tryptophan 5-halogenase; PDBTitle: crystal structure of tryptophan 5-halogenase (pyrh) complex2 with substrate tryptophan
31 | c3i3lA_ |
| not modelled | 99.7 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:alkylhalidase cmls; PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
32 | d1o5wa1 |
| not modelled | 99.7 | 11 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
33 | c2pyxA_ |
| not modelled | 99.6 | 15 | PDB header:biosynthetic protein Chain: A: PDB Molecule:tryptophan halogenase; PDBTitle: crystal structure of tryptophan halogenase (yp_750003.1) from2 shewanella frigidimarina ncimb 400 at 1.50 a resolution
34 | c2e4gB_ |
| not modelled | 99.6 | 15 | PDB header:biosynthetic protein, flavoprotein Chain: B: PDB Molecule:tryptophan halogenase; PDBTitle: rebh with bound l-trp
35 | c3atrA_ |
| not modelled | 99.6 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:conserved archaeal protein; PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand
36 | c2ivdA_ |
| not modelled | 99.6 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen
37 | c3nixF_ |
| not modelled | 99.6 | 12 | PDB header:oxidoreductase Chain: F: PDB Molecule:flavoprotein/dehydrogenase; PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43.
38 | c2qa2A_ |
| not modelled | 99.6 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:polyketide oxygenase cabe; PDBTitle: crystal structure of cabe, an aromatic hydroxylase from angucycline2 biosynthesis, determined to 2.7 a resolution
39 | d2gqfa1 |
| not modelled | 99.5 | 16 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:HI0933 N-terminal domain-like
40 | c3e1tA_ |
| not modelled | 99.5 | 19 | PDB header:flavoprotein Chain: A: PDB Molecule:halogenase; PDBTitle: structure and action of the myxobacterial chondrochloren2 halogenase cndh, a new variant of fad-dependent halogenases
41 | c3nksA_ |
| not modelled | 99.5 | 15 | PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase
42 | d1d5ta1 |
| not modelled | 99.5 | 12 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain
43 | c1phhA_ |
| not modelled | 99.5 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:p-hydroxybenzoate hydroxylase; PDBTitle: crystal structure of p-hydroxybenzoate hydroxylase complexed with its2 reaction product 3,4-dihydroxybenzoate
44 | c3fmwC_ |
| not modelled | 99.5 | 14 | PDB header:oxidoreductase Chain: C: PDB Molecule:oxygenase; PDBTitle: the crystal structure of mtmoiv, a baeyer-villiger2 monooxygenase from the mithramycin biosynthetic pathway in3 streptomyces argillaceus.
45 | c2gmhA_ |
| not modelled | 99.5 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
46 | c3cgvA_ |
| not modelled | 99.5 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:geranylgeranyl reductase related protein; PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution
47 | c3allA_ |
| not modelled | 99.5 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a
48 | c1yq4A_ |
| not modelled | 99.5 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
49 | c3k7tB_ |
| not modelled | 99.5 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:6-hydroxy-l-nicotine oxidase; PDBTitle: crystal structure of apo-form 6-hydroxy-l-nicotine oxidase,2 crystal form p3121
50 | c2bs3A_ |
| not modelled | 99.5 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a; PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes
51 | c1s3bB_ |
| not modelled | 99.5 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase [flavin-containing] b; PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
52 | c2aczA_ |
| not modelled | 99.4 | 14 | PDB header:oxidoreductase/electron transport Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
53 | d2i0za1 |
| not modelled | 99.4 | 12 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:HI0933 N-terminal domain-like
54 | c2xagA_ |
| not modelled | 99.4 | 14 | PDB header:transcription Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine
55 | c1yvvB_ |
| not modelled | 99.4 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase, flavin-containing; PDBTitle: x-ray structurure of p. syringae q888a4 oxidoreductase at2 resolution 2.5a. northeast structural genomics consortium3 target psr10.
56 | c3lovA_ |
| not modelled | 99.4 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of putative protoporphyrinogen oxidase2 (yp_001813199.1) from exiguobacterium sp. 255-15 at 2.06 a resolution
57 | c1jrxA_ |
| not modelled | 99.4 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
58 | c2xdoC_ |
| not modelled | 99.4 | 16 | PDB header:oxidoreductase Chain: C: PDB Molecule:tetx2 protein; PDBTitle: structure of the tetracycline degrading monooxygenase tetx2 from2 bacteroides thetaiotaomicron
59 | c3gmbB_ |
| not modelled | 99.4 | 14 | PDB header:oxidoreductase Chain: B: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic2 acid oxygenase
60 | d2bcgg1 |
| not modelled | 99.4 | 16 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain
61 | c1qo8A_ |
| not modelled | 99.4 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
62 | c1ps9A_ |
| not modelled | 99.4 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
63 | d2bs2a2 |
| not modelled | 99.4 | 15 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
64 | c2dkhA_ |
| not modelled | 99.4 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxybenzoate hydroxylase; PDBTitle: crystal structure of 3-hydroxybenzoate hydroxylase from comamonas2 testosteroni, in complex with the substrate
65 | d1y0pa2 |
| not modelled | 99.4 | 13 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
66 | c1gndA_ |
| not modelled | 99.4 | 17 | PDB header:gtpase activation Chain: A: PDB Molecule:guanine nucleotide dissociation inhibitor; PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform
67 | d1neka2 |
| not modelled | 99.4 | 14 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
68 | c1h83A_ |
| not modelled | 99.3 | 9 | PDB header:oxidoreductase Chain: A: PDB Molecule:polyamine oxidase; PDBTitle: structure of polyamine oxidase in complex with2 1,8-diaminooctane
69 | d1qo8a2 |
| not modelled | 99.3 | 17 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
70 | c2vouA_ |
| not modelled | 99.3 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:2,6-dihydroxypyridine hydroxylase; PDBTitle: structure of 2,6-dihydroxypyridine-3-hydroxylase from2 arthrobacter nicotinovorans
71 | c1d4cB_ |
| not modelled | 99.3 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:flavocytochrome c fumarate reductase; PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1
72 | d1kf6a2 |
| not modelled | 99.3 | 13 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
73 | c3nrnA_ |
| not modelled | 99.3 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pf1083; PDBTitle: crystal structure of pf1083 protein from pyrococcus furiosus,2 northeast structural genomics consortium target pfr223
74 | c3cpiH_ |
| not modelled | 99.3 | 15 | PDB header:protein transport Chain: H: PDB Molecule:rab gdp-dissociation inhibitor; PDBTitle: crystal structure of yeast rab-gdi
75 | c2zxiC_ |
| not modelled | 99.3 | 16 | PDB header:fad-binding protein Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: structure of aquifex aeolicus gida in the form ii crystal
76 | c3v76A_ |
| not modelled | 99.3 | 15 | PDB header:flavoprotein Chain: A: PDB Molecule:flavoprotein; PDBTitle: the crystal structure of a flavoprotein from sinorhizobium meliloti
77 | c1pn0A_ |
| not modelled | 99.3 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:phenol 2-monooxygenase; PDBTitle: phenol hydroxylase from trichosporon cutaneum
78 | c3p4rM_ |
| not modelled | 99.3 | 14 | PDB header:oxidoreductase Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit; PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate
79 | c3ihgA_ |
| not modelled | 99.3 | 14 | PDB header:flavoprotein, oxidoreductase Chain: A: PDB Molecule:rdme; PDBTitle: crystal structure of a ternary complex of aklavinone-112 hydroxylase with fad and aklavinone
80 | c2b9yA_ |
| not modelled | 99.3 | 14 | PDB header:isomerase Chain: A: PDB Molecule:putative aminooxidase; PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes
81 | d2v5za1 |
| not modelled | 99.3 | 15 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
82 | c1kf6A_ |
| not modelled | 99.3 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:fumarate reductase flavoprotein; PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
83 | d2voua1 |
| not modelled | 99.2 | 15 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
84 | c3qj4A_ |
| not modelled | 99.2 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:renalase; PDBTitle: crystal structure of human renalase (isoform 1)
85 | c3nlcA_ |
| not modelled | 99.2 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vp0956; PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147
86 | c3cp8C_ |
| not modelled | 99.2 | 13 | PDB header:oxidoreductase Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum
87 | c3k30B_ |
| not modelled | 99.2 | 14 | PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex
88 | d1vg0a1 |
| not modelled | 99.2 | 15 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain
89 | c2eq7B_ |
| not modelled | 99.2 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
90 | d1k0ia1 |
| not modelled | 99.2 | 19 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
91 | c3g05B_ |
| not modelled | 99.2 | 18 | PDB header:rna binding protein Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
92 | c2rgjA_ |
| not modelled | 99.2 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavin-containing monooxygenase; PDBTitle: crystal structure of flavin-containing monooxygenase phzs
93 | c3cesB_ |
| not modelled | 99.2 | 18 | PDB header:rna binding protein Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
94 | c2e5vA_ |
| not modelled | 99.2 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:l-aspartate oxidase; PDBTitle: crystal structure of l-aspartate oxidase from2 hyperthermophilic archaeon sulfolobus tokodaii
95 | d1w4xa1 |
| not modelled | 99.2 | 15 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
96 | c2x3nA_ |
| not modelled | 99.2 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:probable fad-dependent monooxygenase; PDBTitle: crystal structure of pqsl, a probable fad-dependent2 monooxygenase from pseudomonas aeruginosa
97 | c3o0hA_ |
| not modelled | 99.1 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione reductase; PDBTitle: crystal structure of glutathione reductase from bartonella henselae
98 | c2i0zA_ |
| not modelled | 99.1 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-utilizing dehydrogenases; PDBTitle: crystal structure of a fad binding protein from bacillus2 cereus, a putative nad(fad)-utilizing dehydrogenases
99 | c1f8sA_ |
| not modelled | 99.1 | 28 | PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate.
100 | d1d4ca2 |
| not modelled | 99.1 | 16 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
101 | c3c4aA_ |
| not modelled | 99.1 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:probable tryptophan hydroxylase viod; PDBTitle: crystal structure of viod hydroxylase in complex with fad2 from chromobacterium violaceum. northeast structural3 genomics consortium target cvr158
102 | c3jskN_ |
| not modelled | 99.1 | 20 | PDB header:biosynthetic protein Chain: N: PDB Molecule:cypbp37 protein; PDBTitle: thiazole synthase from neurospora crassa
103 | d1ryia2 |
| not modelled | 99.1 | 15 | Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:D-aminoacid oxidase-like
104 | d2dw4a2 |
| not modelled | 99.1 | 22 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
105 | c1w4xA_ |
| not modelled | 99.1 | 18 | PDB header:oxygenase Chain: A: PDB Molecule:phenylacetone monooxygenase; PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase
106 | c1xdiA_ |
| not modelled | 99.1 | 17 | PDB header:unknown function Chain: A: PDB Molecule:rv3303c-lpda; PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis
107 | d2gmha1 |
| not modelled | 99.1 | 17 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain
108 | c2vvlD_ |
| not modelled | 99.1 | 18 | PDB header:oxidoreductase Chain: D: PDB Molecule:monoamine oxidase n; PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger.
109 | c2r0gB_ |
| not modelled | 99.1 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:rebc; PDBTitle: chromopyrrolic acid-soaked rebc with bound 7-carboxy-k252c
110 | c2gqfA_ |
| not modelled | 99.1 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd
111 | c2v1dA_ |
| not modelled | 99.1 | 20 | PDB header:oxidoreductase/repressor Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
112 | c2hkoA_ |
| not modelled | 99.1 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1
113 | c1vqwB_ |
| not modelled | 99.1 | 18 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein with similarity to flavin-containing PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases
114 | c2jb1B_ |
| not modelled | 99.1 | 22 | PDB header:oxidoreductase Chain: B: PDB Molecule:l-amino acid oxidase; PDBTitle: the l-amino acid oxidase from rhodococcus opacus in complex2 with l-alanine
115 | c1zx9A_ |
| not modelled | 99.1 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: crystal structure of tn501 mera
116 | c3dgzA_ |
| not modelled | 99.1 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase 2; PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
117 | c2w0hA_ |
| not modelled | 99.1 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:trypanothione reductase; PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph
118 | c2yg4B_ |
| not modelled | 99.1 | 22 | PDB header:oxidoreductase Chain: B: PDB Molecule:putrescine oxidase; PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine
119 | c1zkqA_ |
| not modelled | 99.1 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial; PDBTitle: crystal structure of mouse thioredoxin reductase type 2
120 | c2e1mA_ |
| not modelled | 99.1 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
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Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0