PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2qy6A_

Fold library id	PDB Header	Molecule	Title
c2qy6A_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: upf0209 protein yfck;	PDBTitle: crystal structure of the n-terminal domain of upf02092 protein yfck from escherichia coli o157:h7

Links to external resources
Added to library: Tue Mar 16 13:20:58 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S L K H Y S I Q P A N L E F N A E G T P V S R D F D D V Y F S N D N G L E E T R Y V F L G G N Q L E A R F P E H P H P L F V V A E S G F G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
T T
T T T T S S
T T T T T G G G
S S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G L N F L T L W Q A F D Q F R E A H P Q A Q L Q R L H F I S F E K F P L T R A D L A L A H Q H W P E L A P W A E Q L Q A Q W P M P L P G C H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S S
S S
T T
G G G T
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R L L L D R V T L D L W F G D I N E L I S Q L D D S L N Q K V D A W F L D G F A P A K N P D M W T Q N L F N A M A R L A R P G G T L A T F T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G S
G G G T T
S S
T T T
G G G
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence S A G F V R R G L Q E A G F T M Q K R K G F G R K R E M L C G V M E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	L	K	H	Y	S	I	Q	P	A	N	L	E	F	N	A	E	G	T	P	V	S	R	D	F	D	D	V	Y	F	S	N	D	N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	A	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	T	T										T	T						T	T	T	T			S	S		T	T	T													T	T					G	G	G		S	S	S							S			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																		T	T	S	S											S	S												T	T		G	G	G										T				S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	F	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S						G	G	G	S		G	G	G	T	T									S	S		T	T	T		G	G	G																						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	S	A	G	F	V	R	R	G	L	Q	E	A	G	F	T	M	Q	K	R	K	G	F	G	R	K	R	E	M	L	C	G	V	M	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T									S	T	T