Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	L	R	H	L	F	S	S	R	L	R	G	S	L	L	L	G	S	L	L	V	V	S	S	F	S	T	Q	A	A	E	E	M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S
Secondary structure
SS confidence
Disorder		?	?	?	?		?	?													?	?	?	?	?	?	?			?	?	?	?		?			?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I
Secondary structure
SS confidence
Disorder												?		?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T
Secondary structure
SS confidence
Disorder		?	?																																										?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Sequence		A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V	I	R	I	A	L
Secondary structure
SS confidence
Disorder																																																						?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3vh0 chain C Region: 33 - 353 Aligned: 321 Modelled: 321 Confidence: 100.0% Identity: 100% PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna Phyre2 PDB 1nno chain A Region: 23 - 350 Aligned: 321 Modelled: 321 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa Phyre2 PDB 3u4y chain A Region: 52 - 351 Aligned: 284 Modelled: 289 Confidence: 100.0% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771. Phyre2 PDB 2mad chain H Region: 23 - 350 Aligned: 320 Modelled: 325 Confidence: 100.0% Identity: 11% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Methylamine dehydrogenase, H-chain Phyre2 PDB 1gq1 chain B Region: 23 - 352 Aligned: 317 Modelled: 329 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form Phyre2 PDB 2j57 chain J Region: 9 - 350 Aligned: 332 Modelled: 342 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin. Phyre2 PDB 3c75 chain J Region: 38 - 351 Aligned: 306 Modelled: 311 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin Phyre2 PDB 2i0t chain B Region: 45 - 350 Aligned: 300 Modelled: 302 Confidence: 100.0% Identity: 12% PDB header:oxidoreductase Chain: B: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase Phyre2 PDB 3bws chain A Region: 34 - 340 Aligned: 283 Modelled: 293 Confidence: 100.0% Identity: 19% PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 Phyre2 PDB 1qni chain E Region: 41 - 353 Aligned: 287 Modelled: 291 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: E: PDB Molecule:nitrous-oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution Phyre2 PDB 2bbk chain H Region: 41 - 350 Aligned: 305 Modelled: 306 Confidence: 100.0% Identity: 14% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Methylamine dehydrogenase, H-chain Phyre2 PDB 2h47 chain F Region: 45 - 350 Aligned: 300 Modelled: 304 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) Phyre2 PDB 1l0q chain C Region: 53 - 351 Aligned: 276 Modelled: 272 Confidence: 100.0% Identity: 20% PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein Phyre2 PDB 1fwx chain B Region: 47 - 342 Aligned: 276 Modelled: 289 Confidence: 100.0% Identity: 12% PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans Phyre2 PDB 3sbr chain F Region: 49 - 353 Aligned: 284 Modelled: 293 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate Phyre2 PDB 1jmx chain B Region: 47 - 353 Aligned: 299 Modelled: 307 Confidence: 99.9% Identity: 14% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Quinohemoprotein amine dehydrogenase B chain Phyre2 PDB 1pby chain B Region: 53 - 353 Aligned: 283 Modelled: 292 Confidence: 99.9% Identity: 14% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Quinohemoprotein amine dehydrogenase B chain Phyre2 PDB 3hfq chain B Region: 54 - 351 Aligned: 297 Modelled: 296 Confidence: 99.9% Identity: 11% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. Phyre2 PDB 1l0q chain A domain 2 Region: 54 - 350 Aligned: 274 Modelled: 281 Confidence: 99.9% Identity: 20% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: YVTN repeat Phyre2 PDB 1qni chain A domain 2 Region: 43 - 353 Aligned: 286 Modelled: 291 Confidence: 99.9% Identity: 16% Fold: 7-bladed beta-propeller Superfamily: Nitrous oxide reductase, N-terminal domain Family: Nitrous oxide reductase, N-terminal domain Phyre2 1 c3vh0C_ 2 c1nnoA_ 3 c3u4yA_ 4 d2madh_ 5 c1gq1B_ 6 c2j57J_ 7 c3c75J_ 8 c2i0tB_ 9 c3bwsA_ 10 c1qniE_ 11 d2bbkh_ 12 c2h47F_ 13 c1l0qC_ 14 c1fwxB_ 15 c3sbrF_ 16 d1jmxb_ 17 d1pbyb_ 18 c3hfqB_ 19 d1l0qa2 20 d1qnia2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3vh0C_ 100.0 100 PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna 2 c1nnoA_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa 3 c3u4yA_ 100.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771. 4 d2madh_ 100.0 11 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 5 c1gq1B_ 100.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form 6 c2j57J_ 100.0 14 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin. 7 c3c75J_ 100.0 13 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 8 c2i0tB_ 100.0 12 PDB header:oxidoreductase Chain: B: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase 9 c3bwsA_ 100.0 19 PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 10 c1qniE_ 100.0 15 PDB header:oxidoreductase Chain: E: PDB Molecule:nitrous-oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution 11 d2bbkh_ 100.0 14 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 12 c2h47F_ 100.0 13 PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 13 c1l0qC_ 100.0 20 PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein 14 c1fwxB_ 100.0 12 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans 15 c3sbrF_ 100.0 15 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate 16 d1jmxb_ 99.9 14 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 17 d1pbyb_ 99.9 14 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 18 c3hfqB_ 99.9 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. 19 d1l0qa2 99.9 20 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:YVTN repeat 20 d1qnia2 99.9 16 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 21 d1nira2 not modelled 99.9 13 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 22 d1fwxa2 not modelled 99.9 13 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 23 d1qksa2 not modelled 99.9 14 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 24 c3dsmA_ not modelled 99.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bacuni_02894; PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d. 25 c3mbrX_ not modelled 99.9 22 PDB header:transferase Chain: X: PDB Molecule:glutamine cyclotransferase; PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris 26 d1jofa_ not modelled 99.9 9 Fold:7-bladed beta-propeller Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme Family:3-carboxy-cis,cis-mucoante lactonizing enzyme 27 d2p4oa1 not modelled 99.9 12 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:All0351-like 28 c3nolA_ not modelled 99.9 18 PDB header:transferase Chain: A: PDB Molecule:glutamine cyclotransferase; PDBTitle: crystal structure of zymomonas mobilis glutaminyl cyclase (trigonal2 form) 29 d1ri6a_ not modelled 99.9 12 Fold:7-bladed beta-propeller Superfamily:Putative isomerase YbhE Family:Putative isomerase YbhE 30 c3fgbB_ not modelled 99.9 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn; PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b. 31 d1pjxa_ not modelled 99.9 11 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 32 c2iwaA_ not modelled 99.9 17 PDB header:transferase Chain: A: PDB Molecule:glutamine cyclotransferase; PDBTitle: unbound glutaminyl cyclotransferase from carica papaya. 33 c3g4hB_ not modelled 99.9 14 PDB header:hydrolase Chain: B: PDB Molecule:regucalcin; PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound) 34 c3dm0A_ not modelled 99.8 14 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 35 c2iwkB_ not modelled 99.8 14 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: inhibitor-bound form of nitrous oxide reductase from2 achromobacter cycloclastes at 1.7 angstrom resolution 36 c2qe8B_ not modelled 99.8 14 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative hydrolase (ava_4197) from anabaena2 variabilis atcc 29413 at 1.35 a resolution 37 c3dr2A_ not modelled 99.8 13 PDB header:hydrolase Chain: A: PDB Molecule:exported gluconolactonase; PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways 38 c3fw0A_ not modelled 99.8 17 PDB header:lyase Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase; PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate) 39 c3e5zA_ not modelled 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 40 c3nokB_ not modelled 99.8 16 PDB header:transferase Chain: B: PDB Molecule:glutaminyl cyclase; PDBTitle: crystal structure of myxococcus xanthus glutaminyl cyclase 41 c2ghsA_ not modelled 99.8 12 PDB header:calcium-binding protein Chain: A: PDB Molecule:agr_c_1268p; PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution 42 d2ghsa1 not modelled 99.8 12 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 43 d1k32a3 not modelled 99.8 13 Fold:7-bladed beta-propeller Superfamily:Tricorn protease domain 2 Family:Tricorn protease domain 2 44 c2z2pA_ not modelled 99.8 13 PDB header:lyase/antibiotic Chain: A: PDB Molecule:virginiamycin b lyase; PDBTitle: crystal structure of catalytically inactive h270a virginiamycin b2 lyase from staphylococcus aureus with quinupristin 45 d1ijqa1 not modelled 99.7 13 Fold:6-bladed beta-propeller Superfamily:YWTD domain Family:YWTD domain 46 d1npea_ not modelled 99.7 13 Fold:6-bladed beta-propeller Superfamily:YWTD domain Family:YWTD domain 47 c3pe7A_ not modelled 99.7 11 PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese 48 d2dg1a1 not modelled 99.7 14 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 49 d1yfqa_ not modelled 99.7 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:Cell cycle arrest protein BUB3 50 c2qc5A_ not modelled 99.7 14 PDB header:lyase Chain: A: PDB Molecule:streptogramin b lactonase; PDBTitle: streptogramin b lyase structure 51 c3mkqA_ not modelled 99.7 10 PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 52 c1k32E_ not modelled 99.7 13 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease 53 c3tc9B_ not modelled 99.7 9 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical hydrolase; PDBTitle: crystal structure of a hypothetical hydrolase (bt_3476) from2 bacteroides thetaiotaomicron vpi-5482 at 2.23 a resolution 54 c1n6dE_ not modelled 99.7 13 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative 55 d1gxra_ not modelled 99.7 14 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 56 d1nr0a1 not modelled 99.7 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 57 c2w18A_ not modelled 99.7 9 PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 58 c3iytG_ not modelled 99.7 13 PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex 59 c3qqzA_ not modelled 99.7 13 PDB header:metal binding protein Chain: A: PDB Molecule:putative uncharacterized protein yjik; PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073 60 d1v04a_ not modelled 99.7 13 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:Serum paraoxonase/arylesterase 1, PON1 61 c1nr0A_ not modelled 99.7 12 PDB header:structural protein Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1). 62 c3ei4D_ not modelled 99.7 14 PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex 63 d1mdah_ not modelled 99.6 8 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 64 c2oajA_ not modelled 99.6 11 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae 65 c3soqA_ not modelled 99.6 12 PDB header:protein binding/antagonist Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide 66 c2ivzD_ not modelled 99.6 8 PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain 67 c3hrpA_ not modelled 99.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics protein of unknown function2 (np_812590.1) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a3 resolution 68 d2bgra1 not modelled 99.6 9 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 69 c3ei3B_ not modelled 99.6 13 PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex 70 c2w8bB_ not modelled 99.6 9 PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal 71 d1pgua1 not modelled 99.6 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 72 c1r5mA_ not modelled 99.6 14 PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 73 c3s8vA_ not modelled 99.6 15 PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-dkk1 complex 74 c2eceA_ not modelled 99.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:462aa long hypothetical selenium-binding protein; PDBTitle: x-ray structure of hypothetical selenium-binding protein2 from sulfolobus tokodaii, st0059 75 c1pi6A_ not modelled 99.6 12 PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form 76 d1xfda1 not modelled 99.6 9 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 77 c2ismA_ not modelled 99.6 10 PDB header:sugar binding protein Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of the putative oxidoreductase (glucose2 dehydrogenase) (ttha0570) from thermus theromophilus hb8 78 d1q7fa_ not modelled 99.6 12 Fold:6-bladed beta-propeller Superfamily:NHL repeat Family:NHL repeat 79 d1kv9a2 not modelled 99.6 20 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 80 c3a9gA_ not modelled 99.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of pqq-dependent sugar dehydrogenase apo-form 81 c3i2nA_ not modelled 99.6 13 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 92; PDBTitle: crystal structure of wd40 repeats protein wdr92 82 c2g8sB_ not modelled 99.6 10 PDB header:sugar binding protein Chain: B: PDB Molecule:glucose/sorbosone dehydrogenases; PDBTitle: crystal structure of the soluble aldose sugar dehydrogenase2 (asd) from escherichia coli in the apo-form 83 c3mmyE_ not modelled 99.5 9 PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 84 c3jroA_ not modelled 99.5 8 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 85 c2gnqA_ not modelled 99.5 11 PDB header:transcription Chain: A: PDB Molecule:wd-repeat protein 5; PDBTitle: structure of wdr5 86 c2vduB_ not modelled 99.5 12 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(7)-)-methyltransferase- PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex 87 c1ijqA_ not modelled 99.5 14 PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: crystal structure of the ldl receptor ywtd-egf domain pair 88 c3dasA_ not modelled 99.5 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the pqq-bound form of aldose sugar2 dehydrogenase (adh) from streptomyces coelicolor 89 c1kv9A_ not modelled 99.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5 90 c2pbiB_ not modelled 99.5 11 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta 5; PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure 91 c2pm9A_ not modelled 99.5 9 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat 92 c3dw8B_ not modelled 99.5 10 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2a 55 kda regulatory PDBTitle: structure of a protein phosphatase 2a holoenzyme with b55 subunit 93 d1vyhc1 not modelled 99.5 8 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 94 c2aq5A_ not modelled 99.5 13 PDB header:structural protein Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of murine coronin-1 95 c3s94A_ not modelled 99.5 19 PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-e1e2 96 d1kb0a2 not modelled 99.5 19 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 97 c1vyhT_ not modelled 99.5 8 PDB header:hydrolase Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib PDBTitle: paf-ah holoenzyme: lis1/alfa2 98 c4a11B_ not modelled 99.5 10 PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex 99 c2ojhA_ not modelled 99.5 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1656/agr_c_3050; PDBTitle: the structure of putative tolb from agrobacterium tumefaciens 100 d1orva1 not modelled 99.4 9 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 101 c3acpA_ not modelled 99.4 10 PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome 102 c1nexD_ not modelled 99.4 14 PDB header:ligase, cell cycle Chain: D: PDB Molecule:cdc4 protein; PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 103 d1tbga_ not modelled 99.4 13 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 104 d2hqsa1 not modelled 99.4 9 Fold:6-bladed beta-propeller Superfamily:TolB, C-terminal domain Family:TolB, C-terminal domain 105 d1k32a2 not modelled 99.4 8 Fold:6-bladed beta-propeller Superfamily:Tricorn protease N-terminal domain Family:Tricorn protease N-terminal domain 106 c2fp8A_ not modelled 99.4 11 PDB header:lyase Chain: A: PDB Molecule:strictosidine synthase; PDBTitle: structure of strictosidine synthase, the biosynthetic entry to the2 monoterpenoid indole alkaloid family 107 c2j04B_ not modelled 99.4 10 PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic 108 c3c5mC_ not modelled 99.4 10 PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 109 d2ad6a1 not modelled 99.4 20 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 110 c3greA_ not modelled 99.4 10 PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain 111 c1yiqA_ not modelled 99.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism. 112 c3lrvA_ not modelled 99.4 9 PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. 113 c3no2A_ not modelled 99.4 13 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein of unknown function (baccac_01654) from2 bacteroides caccae at 1.35 a resolution 114 d1lrwa_ not modelled 99.3 18 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 115 d1w6sa_ not modelled 99.3 20 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 116 c3jrpA_ not modelled 99.3 10 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: sec13 with nup145c (aa109-179) insertion blade 117 d1rwia_ not modelled 99.3 13 Fold:6-bladed beta-propeller Superfamily:NHL repeat Family:NHL repeat 118 c3jzhA_ not modelled 99.3 12 PDB header:gene regulation Chain: A: PDB Molecule:polycomb protein eed; PDBTitle: eed-h3k79me3 119 c1n7dA_ not modelled 99.3 14 PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor 120 d1crua_ not modelled 99.3 15 Fold:6-bladed beta-propeller Superfamily:Soluble quinoprotein glucose dehydrogenase Family:Soluble quinoprotein glucose dehydrogenase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0