Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A9S1
DateWed Jan 25 15:20:20 GMT 2012
Unique Job IDad8e95e8ad4da78b

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3bfjK_
Top template information
PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase
Confidence and coverage
Confidence:100.0% Coverage: 99%
379 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLA
Secondary structure 

















SS confidence 



























































Disorder  ????
??




















































Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  WAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRS
Secondary structure 






















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  LEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADM
Secondary structure 





























SS confidence 



























































Disorder 



???




















































Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  MDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGE
Secondary structure 










SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  EMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYR
Secondary structure 











SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........310.........320.........330.........340.........350.........360
Sequence  DIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDV
Secondary structure 





















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........370.........380..
Sequence  CTGGNPREATLEDIVELYHTAW
Secondary structure 










SS confidence 





















Disorder 



















??
Disorder confidence 





















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3bfj chain K

3D model

Region: 2 - 382
Aligned: 379
Modelled: 381
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase

Phyre2

PDB 1rrm chain A

3D model

Region: 1 - 382
Aligned: 382
Modelled: 381
Confidence: 100.0%
Identity: 97%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 3ox4 chain D

3D model

Region: 2 - 382
Aligned: 379
Modelled: 381
Confidence: 100.0%
Identity: 42%
PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor

Phyre2

PDB 1vlj chain A

3D model

Region: 1 - 381
Aligned: 377
Modelled: 381
Confidence: 100.0%
Identity: 25%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1oj7 chain A

3D model

Region: 1 - 381
Aligned: 377
Modelled: 381
Confidence: 100.0%
Identity: 23%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1o2d chain A

3D model

Region: 3 - 381
Aligned: 355
Modelled: 363
Confidence: 100.0%
Identity: 25%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 3hl0 chain B

3D model

Region: 2 - 382
Aligned: 340
Modelled: 348
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: B: PDB Molecule:maleylacetate reductase;
PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens

Phyre2

PDB 3iv7 chain B

3D model

Region: 1 - 382
Aligned: 341
Modelled: 359
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase iv;
PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution

Phyre2

PDB 3jzd chain A

3D model

Region: 2 - 382
Aligned: 343
Modelled: 358
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution

Phyre2

PDB 3rf7 chain A

3D model

Region: 3 - 381
Aligned: 348
Modelled: 358
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution

Phyre2

PDB 1jq5 chain A

3D model

Region: 2 - 382
Aligned: 332
Modelled: 335
Confidence: 100.0%
Identity: 22%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1ta9 chain A

3D model

Region: 5 - 381
Aligned: 324
Modelled: 327
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe

Phyre2

PDB 1kq3 chain A

3D model

Region: 1 - 381
Aligned: 330
Modelled: 333
Confidence: 100.0%
Identity: 24%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 3uhj chain E

3D model

Region: 5 - 381
Aligned: 321
Modelled: 331
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: E: PDB Molecule:probable glycerol dehydrogenase;
PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021

Phyre2

PDB 3ce9 chain A

3D model

Region: 2 - 380
Aligned: 324
Modelled: 331
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution

Phyre2

PDB 3okf chain A

3D model

Region: 1 - 381
Aligned: 334
Modelled: 342
Confidence: 100.0%
Identity: 15%
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae

Phyre2

PDB 1xah chain A

3D model

Region: 1 - 355
Aligned: 297
Modelled: 322
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+

Phyre2

PDB 1sg6 chain A

3D model

Region: 8 - 352
Aligned: 325
Modelled: 322
Confidence: 100.0%
Identity: 14%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Dehydroquinate synthase, DHQS

Phyre2

PDB 2gru chain B

3D model

Region: 10 - 357
Aligned: 325
Modelled: 330
Confidence: 100.0%
Identity: 14%
PDB header:lyase
Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase;
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+

Phyre2

PDB 3clh chain A

3D model

Region: 10 - 355
Aligned: 278
Modelled: 282
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori

Phyre2
1

c3bfjK_
2

d1rrma_
3

c3ox4D_
4

d1vlja_
5

d1oj7a_
6

d1o2da_
7

c3hl0B_
8

c3iv7B_
9

c3jzdA_
10

c3rf7A_
11

d1jq5a_
12

c1ta9A_
13

d1kq3a_
14

c3uhjE_
15

c3ce9A_
16

c3okfA_
17

c1xahA_
18

d1sg6a_
19

c2gruB_
20

c3clhA_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100



101



102



103



104



105



106



107



108



109



110



111



112



113



114



115



116



117



118



119



120



121



122



123



124



125



126



127



128



129



130



131



132



133



134



135



136



137



138



139



140



141



142



143



144



145



146



147



148



149



150



151



152



153



154



155



156



157



158



159



160



161



162



163



164



165



166



167



168



169



170



171



172



173



174



175



176



177



178



179



180



181



182



183



184



185



186



187



188



189



190



191



192



193



194



195



196



197



198



199



200



201



202



203



204



205



206



207



208



209



210



211



212



213



214



215



216



217



218



219



220



221



222



223



224



225



226



227



228



229



230



231



232



233



234



235



236



237



238



239



240



241



242



243



244



245



246



247



248



249



250



251



252



253



254



255



256



257



258



259



260



261



262



263



264



265



266



267



268



269



270



271



272



273



274



275



276



277



278



279



280



281



282



283



284



285



286



287



288



289



290



291



292



293



294



295



296



297



298



299



300



301



302



303



304



305



306



307



308



309



310



311



312



313



314



315



316



317



318



319



320



321



322



323



324



325



326



327



328



329



330



331



332



333



334



335



336



337



338



339



340



341



342



343



344



345



346



347



348



349



350



351



352



353



354



355



356



357



358



359



360



361



362



363



364



365



366



367



368



369



370



371



372



373



374



375



376



377



378



379



380



381



382



383



384



385



386



387



388



389



390



391



392



393



394



395



396



397



398



399



400



401



402



403



404



405



406



407



408



409



410



411



412



413



414



415



416



417



418



419



420



421



422



423



424



425



426



427



428



429



430



431



432



433



434



435



436



437



438



439



440



441



442



443



444



445



446



447



448



449



450



451



452



453



454



455



456



457



458



459



460



461



462



463



464



465



466



467



468



469



470



471



472



473



474



475



476



477



478



479



480



481



482



483



484



485



486



487



488



489



490



491



492



493



494



495



496



497



498



499






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bfjK_



100.0 44 PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase
2d1rrma_



100.0 97 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
3c3ox4D_



100.0 42 PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor
4d1vlja_



100.0 25 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
5d1oj7a_



100.0 23 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
6d1o2da_



100.0 25 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
7c3hl0B_



100.0 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:maleylacetate reductase;
PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens
8c3iv7B_



100.0 31 PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase iv;
PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution
9c3jzdA_



100.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution
10c3rf7A_



100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution
11d1jq5a_



100.0 22 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
12c1ta9A_



100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe
13d1kq3a_



100.0 24 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
14c3uhjE_



100.0 22 PDB header:oxidoreductase
Chain: E: PDB Molecule:probable glycerol dehydrogenase;
PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021
15c3ce9A_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution
16c3okfA_



100.0 15 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae
17c1xahA_



100.0 17 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+
18d1sg6a_



100.0 14 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
19c2gruB_



100.0 14 PDB header:lyase
Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase;
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+
20c3clhA_



100.0 18 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori
21d1ujna_



not modelled 100.0 19 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
22c3orsD_



not modelled 97.1 13 PDB header:isomerase,biosynthetic protein
Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
23d1qcza_



not modelled 97.1 16 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
24d1o4va_



not modelled 97.0 18 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
25c3rggD_



not modelled 97.0 19 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
26d1u11a_



not modelled 97.0 13 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
27c2fw9A_



not modelled 97.0 13 PDB header:lyase
Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
28c3lp6D_



not modelled 96.9 16 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
29d2jgra1



not modelled 96.8 12 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
30d2p1ra1



not modelled 96.8 16 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
31d2bona1



not modelled 96.7 12 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
32d1xmpa_



not modelled 96.6 17 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
33c3trhI_



not modelled 96.6 16 PDB header:lyase
Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase
PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
34c2bonB_



not modelled 96.3 16 PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)
35c2h31A_



not modelled 96.3 13 PDB header:ligase, lyase
Chain: A: PDB Molecule:multifunctional protein ade2;
PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
36d1u0ta_



not modelled 96.1 24 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
37d1qo0a_



not modelled 95.5 9 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
38c2qv7A_



not modelled 95.3 22 PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg
39c3s40C_



not modelled 95.2 22 PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
40c2ywxA_



not modelled 95.0 22 PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii
41d2qv7a1



not modelled 94.7 22 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
42d1pfka_



not modelled 92.8 18 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
43c3pfnB_



not modelled 92.6 14 PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase
44c3snrA_



not modelled 92.4 13 PDB header:transport protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris.
45c1zxxA_



not modelled 92.2 17 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
46d1ewka_



not modelled 92.1 13 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
47c2j37W_



not modelled 91.5 21 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
48d4pfka_



not modelled 91.5 21 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
49c2an1D_



not modelled 91.4 21 PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
50c3sg0A_



not modelled 91.3 10 PDB header:signaling protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2
51c3q41B_



not modelled 91.3 8 PDB header:transport protein
Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1;
PDBTitle: crystal structure of the glun1 n-terminal domain (ntd)
52c3mdqA_



not modelled 91.1 11 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution
53c3i09A_



not modelled 91.0 15 PDB header:transport protein
Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein;
PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution
54c3hi0B_



not modelled 90.9 14 PDB header:hydrolase
Chain: B: PDB Molecule:putative exopolyphosphatase;
PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution
55c2iy3A_



not modelled 90.8 11 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
56c3i45A_



not modelled 90.7 13 PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of putative twin-arginine translocation pathway2 signal protein from rhodospirillum rubrum atcc 11170
57d2f48a1



not modelled 90.6 17 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
58c3n0wA_



not modelled 90.3 14 PDB header:transport protein
Chain: A: PDB Molecule:abc branched chain amino acid family transporter,
PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution
59c1t6dB_



not modelled 89.9 10 PDB header:hydrolase
Chain: B: PDB Molecule:exopolyphosphatase;
PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant
60c3eafA_



not modelled 89.8 13 PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein;
PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix
61d2ji7a1



not modelled 89.8 12 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
62c3opyH_



not modelled 89.7 21 PDB header:transferase
Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
63c3opyB_



not modelled 89.7 21 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
64c3rfqC_



not modelled 89.0 20 PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
65d1ovma1



not modelled 88.9 22 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
66c3dm5A_



not modelled 88.9 24 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
67c2dwcB_



not modelled 88.8 15 PDB header:transferase
Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl
PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp
68c3lopA_



not modelled 88.5 8 PDB header:substrate binding protein
Chain: A: PDB Molecule:substrate binding periplasmic protein;
PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum
69c1kjjA_



not modelled 88.3 11 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase 2;
PDBTitle: crystal structure of glycniamide ribonucleotide2 transformylase in complex with mg-atp-gamma-s
70c3k2qA_



not modelled 87.9 22 PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
71d1v4va_



not modelled 87.6 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
72c1qzwC_



not modelled 87.5 22 PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
73d1xi8a3



not modelled 87.4 15 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
74c2e4wA_



not modelled 87.4 8 PDB header:signaling protein
Chain: A: PDB Molecule:metabotropic glutamate receptor 3;
PDBTitle: crystal structure of the extracellular region of the group ii2 metabotropic glutamate receptor complexed with 1s,3s-acpd
75c2j289_



not modelled 87.3 16 PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
76c2i2aA_



not modelled 87.2 18 PDB header:transferase
Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1;
PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes
77c2higA_



not modelled 87.0 18 PDB header:transferase
Chain: A: PDB Molecule:6-phospho-1-fructokinase;
PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei.
78c2floA_



not modelled 87.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7
79c3tqrA_



not modelled 87.0 7 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii
80d1zpda1



not modelled 86.9 23 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
81c3h5lB_



not modelled 86.6 15 PDB header:transport protein
Chain: B: PDB Molecule:putative branched-chain amino acid abc
PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi
82c3o8oB_



not modelled 86.6 18 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase subunit beta;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
83c3hutA_



not modelled 86.4 7 PDB header:transport protein
Chain: A: PDB Molecule:putative branched-chain amino acid abc
PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum
84c3cf4G_



not modelled 86.2 14 PDB header:oxidoreductase
Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
85d1vh3a_



not modelled 86.0 13 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
86c3opyE_



not modelled 85.7 23 PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
87d2ihta1



not modelled 85.6 9 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
88c2q5cA_



not modelled 85.6 13 PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
89d2ez9a1



not modelled 85.5 23 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
90c3cerD_



not modelled 85.5 18 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:possible exopolyphosphatase-like protein;
PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13
91c3kg2A_



not modelled 85.4 10 PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:glutamate receptor 2;
PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775
92d1zl0a2



not modelled 84.5 9 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
93d1pvda1



not modelled 84.4 25 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
94c3lkbB_



not modelled 84.0 15 PDB header:transport protein
Chain: B: PDB Molecule:probable branched-chain amino acid abc
PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine
95d1t9ba1



not modelled 84.0 16 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
96c3t0nA_



not modelled 83.6 12 PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal;
PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5
97c1zrsB_



not modelled 83.4 9 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: wild-type ld-carboxypeptidase
98c3dcjA_



not modelled 83.1 7 PDB header:transferase
Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide
PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative
99d2auna2



not modelled 82.8 9 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
100d1q6za1



not modelled 82.5 13 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
101c2xecD_



not modelled 82.1 17 PDB header:isomerase
Chain: D: PDB Molecule:putative maleate isomerase;
PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris
102c2g4rB_



not modelled 81.9 14 PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga
103c3opyG_



not modelled 81.8 18 PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
104d1y5ea1



not modelled 81.5 15 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
105d2pjua1



not modelled 81.4 11 Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
106c3ip5A_



not modelled 81.1 18 PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid);
PDBTitle: structure of atu2422-gaba receptor in complex with alanine
107c2pjkA_



not modelled 80.7 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor
PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii
108c3o8oC_



not modelled 80.3 19 PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
109c1m6vE_



not modelled 79.9 13 PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
110c3dnfB_



not modelled 79.8 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway
111c3o8nA_



not modelled 79.3 15 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase, muscle type;
PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle
112c2ywrA_



not modelled 79.2 8 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus
113c3jpyA_



not modelled 79.2 9 PDB header:transport protein
Chain: A: PDB Molecule:glutamate [nmda] receptor subunit epsilon-2;
PDBTitle: crystal structure of the zinc-bound amino terminal domain of the nmda2 receptor subunit nr2b
114d1a9xa4



not modelled 79.1 12 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
115c2is8A_



not modelled 79.1 13 PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
116c3p9xB_



not modelled 79.1 18 PDB header:transferase
Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans
117c2yhsA_



not modelled 79.0 15 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
118c2jkzB_



not modelled 78.6 25 PDB header:transferase
Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase;
PDBTitle: saccharomyces cerevisiae hypoxanthine-guanine2 phosphoribosyltransferase in complex with gmp (guanosine 5'3 -monophosphate) (orthorhombic crystal form)
119d2g2ca1



not modelled 78.6 16 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
120d1mkza_



not modelled 78.3 15 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0