PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2gruB_

Fold library id	PDB Header	Molecule	Title
c2gruB_	PDB header: lyase	Chain: B: PDB Molecule: 2-deoxy-scyllo-inosose synthase;	PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+

Links to external resources
Added to library: Tue Mar 16 13:45:51 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T T K Q I C F A D R C F N F A F G E H V L E S V E S Y I P R D E F D Q Y I M I S D S G V P D S I V H Y A A E Y F G K L A P V H I L R F Q G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
G G G G G G T S
S S S
S T T S
T T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E E Y K T L S T V T N L Q E R A I A L G A N R R T A I V A V G G G L T G N V A G V A A G M M F R G I A L I H V P T T F L A A S D S V L S I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
B T T
T T S G G G
S T T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q A V N L T S G K N L V G F Y Y P P R F V F A D T R I L S E S P P R Q V K A G M C E L V K N M L I L E N D N K E F T E D D L N S A N V Y S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T S
S
S
S S
G G G
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K Q L E T F I N F C I S A K M S V L S E D I Y E K K K G L I F E Y G H T I G H A I E L A E Q G G I T H G E A I A V G M I Y A A K I A N R M N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S S S G G G G G G T T T T T S S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L M P E H D V S A H Y W L L N K I G A L Q D I P L K S D P D S I F H Y L I H D N D E D N L G M I L L S G V G K P A M Y N Q T L L T P V R K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T T T S S
S
S
T T
B T T B S

. . . . . . . . . 360

Sequence L I K E V I R E G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	T	K	Q	I	C	F	A	D	R	C	F	N	F	A	F	G	E	H	V	L	E	S	V	E	S	Y	I	P	R	D	E	F	D	Q	Y	I	M	I	S	D	S	G	V	P	D	S	I	V	H	Y	A	A	E	Y	F	G	K	L	A	P	V	H	I	L	R	F	Q	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T									T	T		G	G	G	G	G	G	T	S		S	S	S		S								T	T	S													T	T	T	S										S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	E	Y	K	T	L	S	T	V	T	N	L	Q	E	R	A	I	A	L	G	A	N	R	R	T	A	I	V	A	V	G	G	G	L	T	G	N	V	A	G	V	A	A	G	M	M	F	R	G	I	A	L	I	H	V	P	T	T	F	L	A	A	S	D	S	V	L	S	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G		B														T	T			T	T								S														G	G	G										S						T	T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	A	V	N	L	T	S	G	K	N	L	V	G	F	Y	Y	P	P	R	F	V	F	A	D	T	R	I	L	S	E	S	P	P	R	Q	V	K	A	G	M	C	E	L	V	K	N	M	L	I	L	E	N	D	N	K	E	F	T	E	D	D	L	N	S	A	N	V	Y	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T												S											T	S																			S			S			S	S		G	G	G			S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	Q	L	E	T	F	I	N	F	C	I	S	A	K	M	S	V	L	S	E	D	I	Y	E	K	K	K	G	L	I	F	E	Y	G	H	T	I	G	H	A	I	E	L	A	E	Q	G	G	I	T	H	G	E	A	I	A	V	G	M	I	Y	A	A	K	I	A	N	R	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T		T	T	S	S	S	G	G	G	G	G	G	T	T											T	T	T	S	S																				T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	M	P	E	H	D	V	S	A	H	Y	W	L	L	N	K	I	G	A	L	Q	D	I	P	L	K	S	D	P	D	S	I	F	H	Y	L	I	H	D	N	D	E	D	N	L	G	M	I	L	L	S	G	V	G	K	P	A	M	Y	N	Q	T	L	L	T	P	V	R	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S															T	T	T	T	S	S					S																S										T	T					B	T	T	B	S
	.	.	.	.	.	.	.	.	.	360
Sequence	L	I	K	E	V	I	R	E	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)