Email l.a.kelley@imperial.ac.uk Description P36682 Date Thu Jan 5 11:53:47 GMT 2012 Unique Job ID a3f7b54b27d8afa6

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2zv4O_ 96.7 11 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 2 c2dfsA_ 96.4 6 PDB header:contractile protein/transport protein Chain: A: PDB Molecule:myosin-5a; PDBTitle: 3-d structure of myosin-v inhibited state 3 c1y4cA_ 94.7 11 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 4 c3ojaB_ 92.5 10 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 5 c1bf5A_ 89.6 6 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 6 c1g8xB_ 88.0 8 PDB header:structural protein Chain: B: PDB Molecule:myosin ii heavy chain fused to alpha-actinin 3; PDBTitle: structure of a genetically engineered molecular motor 7 c3ojaA_ 87.7 8 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 8 c1ei3E_ 78.1 7 PDB header: PDB COMPND: 9 c1f5nA_ 77.4 9 PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp. 10 d1wp1a_ 65.0 15 Fold:Outer membrane efflux proteins (OEP) Superfamily:Outer membrane efflux proteins (OEP) Family:Outer membrane efflux proteins (OEP) 11 c3ghgK_ 63.3 6 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 12 c1bg1A_ 60.4 7 PDB header:transcription/dna Chain: A: PDB Molecule:protein (transcription factor stat3b); PDBTitle: transcription factor stat3b/dna complex 13 c1deqO_ 57.6 8 PDB header: PDB COMPND: 14 c1jchC_ 57.0 11 PDB header:ribosome inhibitor, hydrolase Chain: C: PDB Molecule:colicin e3; PDBTitle: crystal structure of colicin e3 in complex with its immunity protein 15 c3cwgA_ 55.2 11 PDB header:transcription Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: unphosphorylated mouse stat3 core fragment 16 c1ei3C_ 54.8 8 PDB header: PDB COMPND: 17 c1deqF_ 47.4 9 PDB header: PDB COMPND: 18 c3r3sD_ 33.5 24 PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase; PDBTitle: structure of the ygha oxidoreductase from salmonella enterica 19 c3dtpA_ 33.5 7 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 20 c3fxeA_ 32.3 40 PDB header:unknown function Chain: A: PDB Molecule:protein icmq; PDBTitle: crystal structure of interacting domains of icmr and icmq (seleno-2 derivative) 21 d2au5a1 not modelled 32.0 25 Fold:EF2947-like Superfamily:EF2947-like Family:EF2947-like 22 c3g33D_ not modelled 27.3 7 PDB header:cell cycle Chain: D: PDB Molecule:ccnd3 protein; PDBTitle: crystal structure of cdk4/cyclin d3 23 c3a9rA_ not modelled 26.0 19 PDB header:isomerase Chain: A: PDB Molecule:d-arabinose isomerase; PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol 24 c2rnmC_ not modelled 24.5 25 PDB header:protein fibril Chain: C: PDB Molecule:small s protein; PDBTitle: structure of the het-s(218-289) prion in its amyloid form2 obtained by solid-state nmr 25 c1h28B_ not modelled 23.4 17 PDB header:cell cycle/transferase substrate Chain: B: PDB Molecule:cyclin a2; PDBTitle: cdk2/cyclin a in complex with an 11-residue recruitment peptide from2 p107 26 c3e0dA_ not modelled 20.5 24 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit 27 c3na7A_ not modelled 20.3 8 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 28 d1epwa3 not modelled 18.4 24 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Clostridium neurotoxins, catalytic domain 29 c3mlqE_ not modelled 18.0 10 PDB header:transferase/transcription Chain: E: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 30 c3mlqH_ not modelled 16.0 8 PDB header:transferase/transcription Chain: H: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 31 d2cchb2 not modelled 13.9 15 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 32 c2l81A_ not modelled 13.8 26 PDB header:cell adhesion Chain: A: PDB Molecule:enhancer of filamentation 1; PDBTitle: solution nmr structure of the serine-rich domain of hef1 (enhancer of2 filamentation 1) from homo sapiens, northeast structural genomics3 consortium target hr5554a 33 c1p8cD_ not modelled 12.6 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima 34 d1k3ra1 not modelled 12.2 50 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 35 c2xu8B_ not modelled 11.8 27 PDB header:structural genomics Chain: B: PDB Molecule:pa1645; PDBTitle: structure of pa1645 36 d1chka_ not modelled 11.7 24 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Chitosanase 37 c2j58G_ not modelled 11.3 29 PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza 38 c3sqgE_ not modelled 11.0 17 PDB header:transferase Chain: E: PDB Molecule:methyl-coenzyme m reductase, beta subunit; PDBTitle: crystal structure of a methyl-coenzyme m reductase purified from black2 sea mats 39 c3a0fA_ not modelled 10.9 46 PDB header:hydrolase Chain: A: PDB Molecule:xyloglucanase; PDBTitle: the crystal structure of geotrichum sp. m128 xyloglucanase 40 d1v3ya_ not modelled 10.7 38 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 41 d2fyuk1 not modelled 10.5 33 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 42 d1l0nk_ not modelled 10.4 33 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 43 c1g3nG_ not modelled 10.4 15 PDB header:cell cycle, signaling protein Chain: G: PDB Molecule:v-cyclin; PDBTitle: structure of a p18(ink4c)-cdk6-k-cyclin ternary complex 44 d1e6vb1 not modelled 10.1 22 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 45 c3hizB_ not modelled 9.9 10 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 46 c2v6yA_ not modelled 9.8 21 PDB header:hydrolase Chain: A: PDB Molecule:aaa family atpase, p60 katanin; PDBTitle: structure of the mit domain from a s. solfataricus vps4-2 like atpase 47 c1zy1B_ not modelled 9.6 13 PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase, mitochondrial; PDBTitle: x-ray structure of peptide deformylase from arabidopsis2 thaliana (atpdf1a) in complex with met-ala-ser 48 d1st6a6 not modelled 9.4 17 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 49 c2ebsB_ not modelled 8.6 46 PDB header:hydrolase Chain: B: PDB Molecule:oligoxyloglucan reducing end-specific PDBTitle: crystal structure anaalysis of oligoxyloglucan reducing-end-2 specific cellobiohydrolase (oxg-rcbh) d465n mutant3 complexed with a xyloglucan heptasaccharide 50 d3ddqb2 not modelled 8.4 15 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 51 c1hbmE_ not modelled 8.3 20 PDB header:methanogenesis Chain: E: PDB Molecule:methyl-coenzyme m reductase i beta subunit; PDBTitle: methyl-coenzyme m reductase enzyme product complex 52 d1lmea_ not modelled 8.1 17 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 53 c3oqvA_ not modelled 7.9 21 PDB header:protein binding Chain: A: PDB Molecule:albc; PDBTitle: albc, a cyclodipeptide synthase from streptomyces noursei 54 c2w2uA_ not modelled 7.7 26 PDB header:hydrolase/transport Chain: A: PDB Molecule:hypothetical p60 katanin; PDBTitle: structural insight into the interaction between archaeal2 escrt-iii and aaa-atpase 55 c2kxhB_ not modelled 7.7 50 PDB header:protein binding Chain: B: PDB Molecule:peptide of far upstream element-binding protein 1; PDBTitle: solution structure of the first two rrm domains of fir in the complex2 with fbp nbox peptide 56 d1hmca_ not modelled 7.5 22 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 57 d1yzma1 not modelled 7.4 17 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 58 c3fbvL_ not modelled 7.3 15 PDB header:transferase, hydrolase Chain: L: PDB Molecule:serine/threonine-protein kinase/endoribonuclease ire1; PDBTitle: crystal structure of the oligomer formed by the kinase-ribonuclease2 domain of ire1 59 d2eyqa1 not modelled 7.2 13 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 60 d1dmta_ not modelled 7.1 16 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Neutral endopeptidase (neprilysin) 61 c2x9qA_ not modelled 6.9 16 PDB header:ligase Chain: A: PDB Molecule:cyclodipeptide synthetase; PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases. 62 d1z0kb1 not modelled 6.9 22 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 63 c2w8iG_ not modelled 6.8 29 PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. 64 c3dldA_ not modelled 6.7 15 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase, xoo1075, from2 xanthomonas oryzae pv. oryzae kacc10331 65 d2djia3 not modelled 6.6 10 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 66 c3g6nA_ not modelled 6.5 13 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of an efpdf complex with met-ala-ser 67 c2jvwA_ not modelled 6.4 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of uncharacterized protein q5e7h1 from vibrio2 fischeri. northeast structural genomics target vfr117 68 c2gu1A_ not modelled 6.4 9 PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae 69 c1e6yE_ not modelled 6.3 17 PDB header:oxidoreductase Chain: E: PDB Molecule:methyl-coenzyme m reductase i beta subunit; PDBTitle: methyl-coenzyme m reductase from methanosarcina barkeri 70 c3dclC_ not modelled 6.2 24 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:tm1086; PDBTitle: crystal structure of tm1086 71 d1hbnb1 not modelled 6.2 20 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 72 c3lkxB_ not modelled 6.2 33 PDB header:chaperone Chain: B: PDB Molecule:nascent polypeptide-associated complex subunit alpha; PDBTitle: human nac dimerization domain 73 d1pcla_ not modelled 6.1 20 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 74 d3blhb1 not modelled 6.1 30 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 75 c2f9jP_ not modelled 6.0 18 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 76 c3oqhB_ not modelled 6.0 24 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein yvmc; PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic 77 d2k0bx1 not modelled 5.8 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 78 c2pjpA_ not modelled 5.8 21 PDB header:translation/rna Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna 79 d1bgfa_ not modelled 5.7 19 Fold:Transcription factor STAT-4 N-domain Superfamily:Transcription factor STAT-4 N-domain Family:Transcription factor STAT-4 N-domain 80 c2xqoA_ not modelled 5.7 25 PDB header:hydrolase Chain: A: PDB Molecule:cellulosome enzyme, dockerin type i; PDBTitle: ctcel124: a cellulase from clostridium thermocellum 81 c3pbqA_ not modelled 5.6 9 PDB header:hydrolase/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of pbp3 complexed with imipenem 82 c1z23A_ not modelled 5.6 23 PDB header:cell adhesion Chain: A: PDB Molecule:crk-associated substrate; PDBTitle: the serine-rich domain from crk-associated substrate2 (p130cas) 83 d1pvda3 not modelled 5.6 13 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 84 d1zpda3 not modelled 5.5 19 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 85 c3nb0A_ not modelled 5.5 20 PDB header:transferase Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase 86 c3qz6A_ not modelled 5.4 16 PDB header:lyase Chain: A: PDB Molecule:hpch/hpai aldolase; PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2 87 d1nmla1 not modelled 5.4 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 88 d1iq0a1 not modelled 5.3 18 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 89 c3fo5A_ not modelled 5.3 20 PDB header:lipid transport Chain: A: PDB Molecule:thioesterase, adipose associated, isoform bfit2; PDBTitle: human start domain of acyl-coenzyme a thioesterase 11 (acot11) 90 c3e3uA_ not modelled 5.2 33 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of mycobacterium tuberculosis peptide2 deformylase in complex with inhibitor 91 c2knjA_ not modelled 5.2 17 PDB header:antimicrobial protein Chain: A: PDB Molecule:microplusin preprotein; PDBTitle: nmr structure of microplusin a antimicrobial peptide from2 rhipicephalus (boophilus) microplus 92 d1lm6a_ not modelled 5.1 13 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 93 c2rd0B_ not modelled 5.1 11 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a human p110alpha/p85alpha complex 94 c3qu1B_ not modelled 5.1 33 PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:peptide deformylase 2; PDBTitle: peptide deformylase from vibrio cholerae 95 d2i53a2 not modelled 5.1 13 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin