Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	I	S	N	S	Q	V	N	R	L	R	H	F	V	R	A	G	L	R	S	L	F	R	P	E	P	Q	T	A	V	E	W	A	D	A	N	Y	Y	L	P	K	E	S	A	Y	Q	E	G	R	W	E	T	L	P	F	Q	R	A	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																			?	?															?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	N	A	M	G	S	D	Y	I	R	E	V	N	V	V	K	S	A	R	V	G	Y	S	K	M	L	L	G	V	Y	A	Y	F	I	E	H	K	Q	R	N	T	L	I	P	A	G	F	V	A	V	F	N	S	D	E	S	S	W	H	L
Secondary structure
SS confidence
Disorder																																							?	?	?	?	?	?	?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	E	D	H	R	G	K	T	V	Y	D	V	A	S	G	D	A	L	F	I	S	E	L	G	P	L	P	E	N	V	T	W	L	S	P	E	G	E	F	Q	K	W	N	G	T	A	W	V	K	D	A	E	A	E	K	L	F	R	I	R
Secondary structure
SS confidence
Disorder																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	A	E	E	T	K	N	S	L	M	Q	V	A	S	E	H	I	A	P	L	Q	D	A	V	D	L	E	I	A	T	E	E	E	T	S	L	L	E	A	W	K	K	Y	R	V	L	L	N	R	V	D	T	S	T	A	P	D	I	E	W
Secondary structure
SS confidence
Disorder																											?	?	?	?	?																				?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.
Sequence		P	T	N	P	V	R	E
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kz6 chain A Region: 171 - 245 Aligned: 66 Modelled: 75 Confidence: 97.3% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2 Phyre2 PDB 3ezk chain B Region: 29 - 114 Aligned: 75 Modelled: 86 Confidence: 96.9% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:dna packaging protein gp17; PDBTitle: bacteriophage t4 gp17 motor assembly based on crystal2 structures and cryo-em reconstructions Phyre2 PDB 2o0h chain A Region: 50 - 105 Aligned: 54 Modelled: 56 Confidence: 91.3% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:dna packaging protein gp17; PDBTitle: t4 gp17 atpase domain mutant complexed with atp Phyre2 PDB 3b85 chain A Region: 54 - 109 Aligned: 54 Modelled: 56 Confidence: 87.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:phosphate starvation-inducible protein; PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum Phyre2 PDB 1uaa chain A domain 1 Region: 52 - 105 Aligned: 50 Modelled: 54 Confidence: 85.1% Identity: 16% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 2chg chain B Region: 33 - 99 Aligned: 62 Modelled: 67 Confidence: 84.9% Identity: 11% PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Phyre2 PDB 1wp9 chain D Region: 47 - 103 Aligned: 54 Modelled: 57 Confidence: 84.1% Identity: 11% PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent rna helicase, putative; PDBTitle: crystal structure of pyrococcus furiosus hef helicase domain Phyre2 PDB 3lfu chain A Region: 52 - 105 Aligned: 50 Modelled: 54 Confidence: 83.3% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of e. coli uvrd Phyre2 PDB 2p6r chain A domain 3 Region: 50 - 103 Aligned: 52 Modelled: 54 Confidence: 82.5% Identity: 10% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 2is6 chain B Region: 52 - 100 Aligned: 45 Modelled: 49 Confidence: 82.0% Identity: 20% PDB header:hydrolase/dna Chain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex Phyre2 PDB 2eyq chain A domain 3 Region: 50 - 103 Aligned: 54 Modelled: 54 Confidence: 80.4% Identity: 17% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 2oca chain A Region: 52 - 103 Aligned: 50 Modelled: 52 Confidence: 80.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase uvsw; PDBTitle: the crystal structure of t4 uvsw Phyre2 PDB 1gl9 chain B domain 1 Region: 51 - 104 Aligned: 52 Modelled: 54 Confidence: 78.8% Identity: 15% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Helicase-like "domain" of reverse gyrase Phyre2 PDB 1uaa chain B Region: 52 - 110 Aligned: 52 Modelled: 59 Confidence: 78.3% Identity: 17% PDB header:hydrolase/dna Chain: B: PDB Molecule:protein (atp-dependent dna helicase rep.); PDBTitle: e. coli rep helicase/dna complex Phyre2 PDB 1pjr chain A domain 1 Region: 54 - 103 Aligned: 46 Modelled: 50 Confidence: 77.6% Identity: 20% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 2va8 chain A Region: 49 - 103 Aligned: 54 Modelled: 55 Confidence: 77.3% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 Phyre2 PDB 1rif chain A Region: 55 - 103 Aligned: 47 Modelled: 49 Confidence: 77.2% Identity: 17% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: DNA helicase UvsW Phyre2 PDB 1w36 chain B domain 1 Region: 61 - 100 Aligned: 40 Modelled: 40 Confidence: 75.4% Identity: 13% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1pjr chain A Region: 54 - 103 Aligned: 46 Modelled: 50 Confidence: 75.1% Identity: 20% PDB header:helicase Chain: A: PDB Molecule:pcra; PDBTitle: structure of dna helicase Phyre2 PDB 2cnw chain F Region: 57 - 105 Aligned: 49 Modelled: 49 Confidence: 74.5% Identity: 14% PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy Phyre2 PDB 2gxa chain A Region: 4 - 93 Aligned: 86 Modelled: 86 Confidence: 51.4% Identity: 17% PDB header:replication/dna Chain: A: PDB Molecule:replication protein e1; PDBTitle: crystal structure of papillomavirus e1 hexameric helicase2 with ssdna and mgadp Phyre2 PDB 3cbq chain A Region: 71 - 126 Aligned: 56 Modelled: 56 Confidence: 50.1% Identity: 14% PDB header:nucleotide binding protein Chain: A: PDB Molecule:gtp-binding protein rem 2; PDBTitle: crystal structure of the human rem2 gtpase with bound gdp Phyre2 1 c2kz6A_ 2 c3ezkB_ 3 c2o0hA_ 4 c3b85A_ 5 d1uaaa1 6 c2chgB_ 7 c1wp9D_ 8 c3lfuA_ 9 d2p6ra3 10 c2is6B_ 11 d2eyqa3 12 c2ocaA_ 13 d1gl9b1 14 c1uaaB_ 15 d1pjra1 16 c2va8A_ 17 d1rifa_ 18 d1w36b1 19 c1pjrA_ 20 c2cnwF_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 c2gxaA_ 44 45 c3cbqA_ 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kz6A_ 97.3 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2 2 c3ezkB_ 96.9 19 PDB header:hydrolase Chain: B: PDB Molecule:dna packaging protein gp17; PDBTitle: bacteriophage t4 gp17 motor assembly based on crystal2 structures and cryo-em reconstructions 3 c2o0hA_ 91.3 17 PDB header:hydrolase Chain: A: PDB Molecule:dna packaging protein gp17; PDBTitle: t4 gp17 atpase domain mutant complexed with atp 4 c3b85A_ 87.9 19 PDB header:hydrolase Chain: A: PDB Molecule:phosphate starvation-inducible protein; PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum 5 d1uaaa1 85.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 6 c2chgB_ 84.9 11 PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 7 c1wp9D_ 84.1 11 PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent rna helicase, putative; PDBTitle: crystal structure of pyrococcus furiosus hef helicase domain 8 c3lfuA_ 83.3 18 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of e. coli uvrd 9 d2p6ra3 82.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 10 c2is6B_ 82.0 20 PDB header:hydrolase/dna Chain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex 11 d2eyqa3 80.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 12 c2ocaA_ 80.0 18 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase uvsw; PDBTitle: the crystal structure of t4 uvsw 13 d1gl9b1 78.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Helicase-like "domain" of reverse gyrase 14 c1uaaB_ 78.3 17 PDB header:hydrolase/dna Chain: B: PDB Molecule:protein (atp-dependent dna helicase rep.); PDBTitle: e. coli rep helicase/dna complex 15 d1pjra1 77.6 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 16 c2va8A_ 77.3 9 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 17 d1rifa_ 77.2 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:DNA helicase UvsW 18 d1w36b1 75.4 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 19 c1pjrA_ 75.1 20 PDB header:helicase Chain: A: PDB Molecule:pcra; PDBTitle: structure of dna helicase 20 c2cnwF_ 74.5 14 PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy 21 c2zj2A_ not modelled 73.3 9 PDB header:hydrolase Chain: A: PDB Molecule:putative ski2-type helicase; PDBTitle: archaeal dna helicase hjm apo state in form 1 22 c2pjrF_ not modelled 72.9 19 PDB header:hydrolase/dna Chain: F: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex 23 c3oiyB_ not modelled 72.2 13 PDB header:isomerase Chain: B: PDB Molecule:reverse gyrase helicase domain; PDBTitle: helicase domain of reverse gyrase from thermotoga maritima 24 c3q5dA_ not modelled 70.1 20 PDB header:hydrolase Chain: A: PDB Molecule:atlastin-1; PDBTitle: crystal structure of human atlastin-1 (residues 1-447) bound to gdp,2 crystal form 1 25 c3b6eA_ not modelled 69.0 10 PDB header:hydrolase Chain: A: PDB Molecule:interferon-induced helicase c domain-containing protein 1; PDBTitle: crystal structure of human dech-box rna helicase mda5 (melanoma2 differentiation-associated protein 5), dech-domain 26 d1gkub1 not modelled 68.6 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Helicase-like "domain" of reverse gyrase 27 c1f5nA_ not modelled 67.7 24 PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp. 28 d1wp9a1 not modelled 66.6 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 29 c3tmiA_ not modelled 61.9 6 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx58; PDBTitle: structural basis for rna recognition and activation of rig-i 30 c2gk7A_ not modelled 61.2 8 PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: structural and functional insights into the human upf1 helicase core 31 c3olqA_ not modelled 59.7 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320 32 d1gm5a3 not modelled 58.5 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 33 c3fhtA_ not modelled 57.3 9 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of human dbp5 in complex with amppnp and rna 34 c1hv8B_ not modelled 56.6 11 PDB header:rna binding protein Chain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii 35 d1n0ua2 not modelled 56.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 36 c2d7dA_ not modelled 55.8 9 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 37 c2chvE_ not modelled 55.5 9 PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex 38 c1vmaA_ not modelled 55.1 17 PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution 39 c1sxjC_ not modelled 54.4 7 PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) 40 c3ewsA_ not modelled 54.0 9 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: human dead-box rna-helicase ddx19 in complex with adp 41 c3b9qA_ not modelled 52.0 8 PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana 42 c2qy9A_ not modelled 51.7 14 PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy 43 c2gxaA_ 51.4 17 PDB header:replication/dna Chain: A: PDB Molecule:replication protein e1; PDBTitle: crystal structure of papillomavirus e1 hexameric helicase2 with ssdna and mgadp 44 c4a4zA_ not modelled 50.9 14 PDB header:hydrolase Chain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp 45 c3cbqA_ 50.1 14 PDB header:nucleotide binding protein Chain: A: PDB Molecule:gtp-binding protein rem 2; PDBTitle: crystal structure of the human rem2 gtpase with bound gdp 46 c1qhhA_ not modelled 49.8 17 PDB header:hydrolase Chain: A: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 47 c2b92A_ not modelled 49.8 18 PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: crystal-structure of the n-terminal large gtpase domain of human2 guanylate binding protein 1 (hgbp1) in complex with gdp/alf3 48 c1xpuB_ not modelled 48.9 10 PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) 49 c2px0D_ not modelled 48.7 15 PDB header:biosynthetic protein Chain: D: PDB Molecule:flagellar biosynthesis protein flhf; PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+) 50 c2qu8A_ not modelled 48.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nucleolar gtp-binding protein 1; PDBTitle: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w2 from plasmodium falciparum 51 c2xgjA_ not modelled 47.7 19 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance 52 c2f1rA_ not modelled 47.7 8 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb) 53 c2p6uA_ not modelled 47.1 9 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 54 c2qgzA_ not modelled 47.0 15 PDB header:hydrolase Chain: A: PDB Molecule:putative primosome component; PDBTitle: crystal structure of a putative primosome component from2 streptococcus pyogenes serotype m3. northeast structural3 genomics target dr58 55 d1tuea_ not modelled 47.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 56 c3i5yA_ not modelled 46.9 16 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp 57 c2j7pA_ not modelled 46.5 17 PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy 58 c2h2wA_ not modelled 46.0 12 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 59 c1sxjD_ not modelled 45.8 11 PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) 60 d2erxa1 not modelled 45.6 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 61 c1zu4A_ not modelled 45.5 16 PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212 62 d2jdid3 not modelled 44.7 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 63 c2xzlA_ not modelled 43.9 8 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent helicase nam7; PDBTitle: upf1-rna complex 64 d1m7ba_ not modelled 43.2 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 65 c1gwnA_ not modelled 43.2 19 PDB header:gtpase Chain: A: PDB Molecule:rho-related gtp-binding protein rhoe; PDBTitle: the crystal structure of the core domain of rhoe/rnd3 - a2 constitutively activated small g protein 66 c3doeA_ not modelled 42.8 7 PDB header:signaling protein/hydrolase Chain: A: PDB Molecule:adp-ribosylation factor-like protein 2; PDBTitle: complex of arl2 and bart, crystal form 1 67 c2gzaB_ not modelled 42.8 7 PDB header:hydrolase Chain: B: PDB Molecule:type iv secretion system protein virb11; PDBTitle: crystal structure of the virb11 atpase from the brucella suis type iv2 secretion system in complex with sulphate 68 c3pexA_ not modelled 42.6 9 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: s. cerevisiae dbp5 l327v bound to gle1 h337r and ip6 69 c3q85B_ not modelled 41.9 24 PDB header:signaling protein Chain: B: PDB Molecule:gtp-binding protein rem 2; PDBTitle: crystal structure of rem2 g-domain -gtp analog complex 70 c2hupB_ not modelled 41.7 19 PDB header:signaling protein Chain: B: PDB Molecule:ras-related protein rab-43; PDBTitle: crystal structure of human rab43 in complex with gdp 71 c3lxwA_ not modelled 41.5 18 PDB header:immune system Chain: A: PDB Molecule:gtpase imap family member 1; PDBTitle: crystal structure of human gtpase imap family member 1 72 d1z2aa1 not modelled 41.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 73 d1wmsa_ not modelled 40.6 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 74 c3dmdA_ not modelled 39.7 8 PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus 75 c1gm5A_ not modelled 39.7 16 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 76 c1xtkA_ not modelled 39.6 9 PDB header:gene regulation Chain: A: PDB Molecule:probable atp-dependent rna helicase p47; PDBTitle: structure of decd to dead mutation of human uap56 77 c3clvA_ not modelled 39.6 18 PDB header:signaling protein Chain: A: PDB Molecule:rab5 protein, putative; PDBTitle: crystal structure of rab5a from plasmodium falciparum,2 pfb0500c 78 c2v9pH_ not modelled 39.3 19 PDB header:hydrolase Chain: H: PDB Molecule:replication protein e1; PDBTitle: crystal structure of papillomavirus e1 hexameric helicase2 dna-free form 79 d1z0aa1 not modelled 39.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 80 d1upta_ not modelled 39.0 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 81 c3l0oB_ not modelled 38.8 11 PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima 82 d1xpua3 not modelled 38.5 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 83 c3e1sA_ not modelled 38.2 20 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd; PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2 84 c2zejA_ not modelled 38.2 18 PDB header:transferase Chain: A: PDB Molecule:leucine-rich repeat kinase 2; PDBTitle: structure of the roc domain from the parkinson's disease-associated2 leucine-rich repeat kinase 2 reveals a dimeric gtpase 85 c3tbkA_ not modelled 38.2 6 PDB header:hydrolase Chain: A: PDB Molecule:rig-i helicase domain; PDBTitle: mouse rig-i atpase domain 86 c2gf0C_ not modelled 37.9 29 PDB header:transport protein Chain: C: PDB Molecule:gtp-binding protein di-ras1; PDBTitle: the crystal structure of the human diras1 gtpase in the2 inactive gdp bound state 87 c1iqpF_ not modelled 37.2 11 PDB header:replication Chain: F: PDB Molecule:rfcs; PDBTitle: crystal structure of the clamp loader small subunit from2 pyrococcus furiosus 88 d1g16a_ not modelled 37.1 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 89 d1sxjb2 not modelled 37.0 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 90 d1mr3f_ not modelled 36.9 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 91 d1mkya1 not modelled 36.8 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 92 c2oaq1_ not modelled 36.5 26 PDB header:hydrolase Chain: 1: PDB Molecule:type ii secretion system protein; PDBTitle: crystal structure of the archaeal secretion atpase gspe in complex2 with phosphate 93 d2bcjq2 not modelled 36.1 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 94 d2a5da1 not modelled 35.6 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 95 d1qzxa3 not modelled 35.3 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 96 c1gq1B_ not modelled 35.3 19 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form 97 d2fn4a1 not modelled 35.3 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 98 d2gjsa1 not modelled 35.2 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 99 d1njfa_ not modelled 35.1 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 100 d1fx0b3 not modelled 35.1 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 101 d1g6oa_ not modelled 34.9 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 102 c2oilA_ not modelled 34.7 13 PDB header:protein transport Chain: A: PDB Molecule:ras-related protein rab-25; PDBTitle: crystal structure of human rab25 in complex with gdp 103 c1sxjE_ not modelled 34.6 11 PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) 104 d1zd9a1 not modelled 34.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 105 c1sxjB_ not modelled 34.1 7 PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) 106 d3raba_ not modelled 33.8 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 107 c2qenA_ not modelled 33.7 19 PDB header:unknown function Chain: A: PDB Molecule:walker-type atpase; PDBTitle: the walker-type atpase paby2304 of pyrococcus abyssi 108 c2og2A_ not modelled 33.2 11 PDB header:protein transport Chain: A: PDB Molecule:putative signal recognition particle receptor; PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana 109 c2f7sA_ not modelled 33.1 14 PDB header:signaling protein Chain: A: PDB Molecule:ras-related protein rab-27b; PDBTitle: the crystal structure of human rab27b bound to gdp 110 d2f7sa1 not modelled 33.1 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 111 d2gf0a1 not modelled 33.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 112 c1zbdA_ not modelled 32.4 11 PDB header:g protein Chain: A: PDB Molecule:rabphilin-3a; PDBTitle: structural basis of rab effector specificity: crystal2 structure of the small g protein rab3a complexed with the3 effector domain of rabphilin-3a 113 c2j1lA_ not modelled 32.4 20 PDB header:hydrolase Chain: A: PDB Molecule:rho-related gtp-binding protein rhod; PDBTitle: crystal structure of human rho-related gtp-binding protein2 rhod 114 c2il1A_ not modelled 32.0 21 PDB header:protein transport Chain: A: PDB Molecule:rab12; PDBTitle: crystal structure of a predicted human gtpase in complex with gdp 115 c2e87A_ not modelled 31.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1320; PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp 116 d1ihua2 not modelled 31.4 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 117 c3l9oA_ not modelled 31.3 21 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome 118 d2a5ja1 not modelled 31.2 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 119 d1ye8a1 not modelled 31.2 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 120 d1vg8a_ not modelled 31.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0