PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1iqpF_

Fold library id	PDB Header	Molecule	Title
c1iqpF_	PDB header: replication	Chain: F: PDB Molecule: rfcs;	PDBTitle: crystal structure of the clamp loader small subunit from2 pyrococcus furiosus

Links to external resources
Added to library: Tue Mar 16 12:08:38 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S E E I R E V K V L E K P W V E K Y R P Q R L D D I V G Q E H I V K R L K H Y V K T G S M P H L L F A G P P G V G K T T A A L A L A R E L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S S
G G G T S
S G G G
S
T T T
S
T T S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G E N W R H N F L E L N A S D E R G I N V I R E K V K E F A R T K P I G G A S F K I I F L D E A D A L T Q D A Q Q A L R R T M E M F S S N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T T S S
T T S
S S S
S
T G G G S
T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R F I L S C N Y S S K I I E P I Q S R C A I F R F R P L R D E D I A K R L R Y I A E N E G L E L T E E G L Q A I L Y I A E G D M R R A I N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G S
T T
T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L Q A A A A L D K K I T D E N V F M V A S R A R P E D I R E M M L L A L K G N F L K A R E K L R E I L L K Q G L S G E D V L V Q M H K E V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T
T
T
G G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . .

Sequence N L P I E E P K K V L L A D K I G E Y N F R L V E G A N E I I Q L E A L L A Q F T L I G K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	E	E	I	R	E	V	K	V	L	E	K	P	W	V	E	K	Y	R	P	Q	R	L	D	D	I	V	G	Q	E	H	I	V	K	R	L	K	H	Y	V	K	T	G	S	M	P	H	L	L	F	A	G	P	P	G	V	G	K	T	T	A	A	L	A	L	A	R	E	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T					T	T	S	S		G	G	G	T	S				S	G	G	G			S													T	T	T									S		T	T	S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	E	N	W	R	H	N	F	L	E	L	N	A	S	D	E	R	G	I	N	V	I	R	E	K	V	K	E	F	A	R	T	K	P	I	G	G	A	S	F	K	I	I	F	L	D	E	A	D	A	L	T	Q	D	A	Q	Q	A	L	R	R	T	M	E	M	F	S	S	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G										T	T	T	S	S													T	T	S			S	S	S		S								T	G	G	G	S															T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	F	I	L	S	C	N	Y	S	S	K	I	I	E	P	I	Q	S	R	C	A	I	F	R	F	R	P	L	R	D	E	D	I	A	K	R	L	R	Y	I	A	E	N	E	G	L	E	L	T	E	E	G	L	Q	A	I	L	Y	I	A	E	G	D	M	R	R	A	I	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S		G	G	G	S						T	T																										T																T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	Q	A	A	A	A	L	D	K	K	I	T	D	E	N	V	F	M	V	A	S	R	A	R	P	E	D	I	R	E	M	M	L	L	A	L	K	G	N	F	L	K	A	R	E	K	L	R	E	I	L	L	K	Q	G	L	S	G	E	D	V	L	V	Q	M	H	K	E	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		S												T																	T																T															G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Sequence	N	L	P	I	E	E	P	K	K	V	L	L	A	D	K	I	G	E	Y	N	F	R	L	V	E	G	A	N	E	I	I	Q	L	E	A	L	L	A	Q	F	T	L	I	G	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	S																																										T	T