Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	P	V	M	L	D	V	E	G	Y	E	L	D	A	E	E	R	E	I	L	A	H	P	L	V	G	G	L	I	L	F	T	R	N	Y	H	D	P	A	Q	L	R	E	L	V	R	Q	I	R	A	A	S	R	N	R	L	V	V	A
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	D	Q	E	G	G	R	V	Q	R	F	R	E	G	F	T	R	L	P	A	A	Q	S	F	A	A	L	S	G	M	E	E	G	G	K	L	A	Q	E	A	G	W	L	M	A	S	E	M	I	A	M	D	I	D	I	S	F	A	P	V
Secondary structure
SS confidence
Disorder																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	D	V	G	H	I	S	A	A	I	G	E	R	S	Y	H	A	D	P	Q	K	A	L	A	I	A	S	R	F	I	D	G	M	H	E	A	G	M	K	T	T	G	K	H	F	P	G	H	G	A	V	T	A	D	S	H	K	E	T	P
Secondary structure
SS confidence
Disorder																																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	D	P	R	P	Q	A	E	I	R	A	K	D	M	S	V	F	S	S	L	I	R	E	N	K	L	D	A	I	M	P	A	H	V	I	Y	S	D	V	D	P	R	P	A	S	G	S	P	Y	W	L	K	T	V	L	R	Q	E	L	G
Secondary structure
SS confidence
Disorder																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	D	G	V	I	F	S	D	D	L	S	M	E	G	A	A	I	M	G	S	Y	A	E	R	G	Q	A	S	L	D	A	G	C	D	M	I	L	V	C	N	N	R	K	G	A	V	S	V	L	D	N	L	S	P	I	K	A	E	R	V
Secondary structure
SS confidence
Disorder																		?																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Sequence		T	R	L	Y	H	K	G	S	F	S	R	Q	E	L	M	D	S	A	R	W	K	A	I	S	T	R	L	N	Q	L	H	E	R	W	Q	E	E	K	A	G	H
Secondary structure
SS confidence
Disorder								?	?	?																							?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3sql chain B Region: 3 - 341 Aligned: 323 Modelled: 325 Confidence: 100.0% Identity: 28% PDB header:hydrolase Chain: B: PDB Molecule:glycosyl hydrolase family 3; PDBTitle: crystal structure of glycoside hydrolase from synechococcus Phyre2 PDB 1tr9 chain A Region: 1 - 334 Aligned: 327 Modelled: 334 Confidence: 100.0% Identity: 55% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: NagZ-like Phyre2 PDB 3bmx chain B Region: 2 - 337 Aligned: 326 Modelled: 336 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis Phyre2 PDB 3lk6 chain A Region: 2 - 338 Aligned: 329 Modelled: 337 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis Phyre2 PDB 3tev chain A Region: 2 - 330 Aligned: 298 Modelled: 315 Confidence: 100.0% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hyrolase, family 3; PDBTitle: the crystal structure of glycosyl hydrolase from deinococcus2 radiodurans r1 Phyre2 PDB 1x38 chain A domain 1 Region: 4 - 339 Aligned: 305 Modelled: 322 Confidence: 100.0% Identity: 20% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: NagZ-like Phyre2 PDB 1ex1 chain A Region: 4 - 339 Aligned: 305 Modelled: 322 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:protein (beta-d-glucan exohydrolase isoenzyme exo1); PDBTitle: beta-d-glucan exohydrolase from barley Phyre2 PDB 3f93 chain D Region: 2 - 337 Aligned: 304 Modelled: 322 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: D: PDB Molecule:beta-glucosidase; PDBTitle: crystal structure of exo-1,3/1,4-beta-glucanase (exop) from2 pseudoalteromonas sp. bb1 Phyre2 PDB 2x41 chain A Region: 2 - 340 Aligned: 291 Modelled: 305 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose Phyre2 PDB 3ac0 chain B Region: 51 - 341 Aligned: 259 Modelled: 275 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose Phyre2 PDB 1o4u chain A domain 1 Region: 142 - 280 Aligned: 97 Modelled: 121 Confidence: 78.2% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: NadC C-terminal domain-like Phyre2 PDB 3mmr chain A Region: 4 - 159 Aligned: 141 Modelled: 151 Confidence: 69.1% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:arginase; PDBTitle: structure of plasmodium falciparum arginase in complex with abh Phyre2 PDB 1o4u chain A Region: 142 - 280 Aligned: 98 Modelled: 114 Confidence: 60.7% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution Phyre2 PDB 1vqo chain N domain 1 Region: 58 - 168 Aligned: 91 Modelled: 94 Confidence: 50.2% Identity: 15% Fold: Ribonuclease H-like motif Superfamily: Translational machinery components Family: Ribosomal protein L18 and S11 Phyre2 PDB 2y69 chain X Region: 102 - 127 Aligned: 26 Modelled: 26 Confidence: 45.1% Identity: 15% PDB header:electron transport Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 7b; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen Phyre2 PDB 1v54 chain K Region: 102 - 127 Aligned: 26 Modelled: 26 Confidence: 45.1% Identity: 15% Fold: Single transmembrane helix Superfamily: Mitochondrial cytochrome c oxidase subunit VIIb Family: Mitochondrial cytochrome c oxidase subunit VIIb Phyre2 PDB 3o3n chain A Region: 15 - 63 Aligned: 49 Modelled: 49 Confidence: 36.4% Identity: 12% PDB header:lyase Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa Phyre2 PDB 4a1a chain M Region: 94 - 203 Aligned: 98 Modelled: 98 Confidence: 29.4% Identity: 21% PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Phyre2 PDB 1t9h chain A domain 2 Region: 299 - 334 Aligned: 33 Modelled: 36 Confidence: 28.8% Identity: 12% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: G proteins Phyre2 PDB 2a0m chain A domain 1 Region: 4 - 153 Aligned: 122 Modelled: 145 Confidence: 28.6% Identity: 17% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 1 c3sqlB_ 2 d1tr9a_ 3 c3bmxB_ 4 c3lk6A_ 5 c3tevA_ 6 d1x38a1 7 c1ex1A_ 8 c3f93D_ 9 c2x41A_ 10 c3ac0B_ 11 d1o4ua1 12 c3mmrA_ 13 c1o4uA_ 14 d1vqon1 15 c2y69X_ 16 d1v54k_ 17 c3o3nA_ 18 c4a1aM_ 19 d1t9ha2 20 d2a0ma1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3sqlB_ 100.0 28 PDB header:hydrolase Chain: B: PDB Molecule:glycosyl hydrolase family 3; PDBTitle: crystal structure of glycoside hydrolase from synechococcus 2 d1tr9a_ 100.0 55 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:NagZ-like 3 c3bmxB_ 100.0 26 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis 4 c3lk6A_ 100.0 26 PDB header:hydrolase Chain: A: PDB Molecule:lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis 5 c3tevA_ 100.0 28 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hyrolase, family 3; PDBTitle: the crystal structure of glycosyl hydrolase from deinococcus2 radiodurans r1 6 d1x38a1 100.0 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:NagZ-like 7 c1ex1A_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:protein (beta-d-glucan exohydrolase isoenzyme exo1); PDBTitle: beta-d-glucan exohydrolase from barley 8 c3f93D_ 100.0 20 PDB header:hydrolase Chain: D: PDB Molecule:beta-glucosidase; PDBTitle: crystal structure of exo-1,3/1,4-beta-glucanase (exop) from2 pseudoalteromonas sp. bb1 9 c2x41A_ 100.0 22 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 10 c3ac0B_ 100.0 22 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 11 d1o4ua1 78.2 22 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 12 c3mmrA_ 69.1 13 PDB header:hydrolase Chain: A: PDB Molecule:arginase; PDBTitle: structure of plasmodium falciparum arginase in complex with abh 13 c1o4uA_ 60.7 20 PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution 14 d1vqon1 50.2 15 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 15 c2y69X_ 45.1 15 PDB header:electron transport Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 7b; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 16 d1v54k_ 45.1 15 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIb Family:Mitochondrial cytochrome c oxidase subunit VIIb 17 c3o3nA_ 36.4 12 PDB header:lyase Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 18 c4a1aM_ 29.4 21 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 19 d1t9ha2 28.8 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 20 d2a0ma1 28.6 17 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 21 c3m1rF_ not modelled 26.1 12 PDB header:hydrolase Chain: F: PDB Molecule:formimidoylglutamase; PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168 22 d1nmpa_ not modelled 22.3 8 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 23 c1iq8B_ not modelled 22.2 17 PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii 24 d1eaka1 not modelled 19.5 6 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 25 c3bolB_ not modelled 19.3 17 PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ 26 d1cf2o2 not modelled 19.3 20 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 27 c3kruC_ not modelled 18.8 14 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39 28 c3guzB_ not modelled 18.2 19 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: structural and substrate-binding studies of pantothenate2 synthenate (ps)provide insights into homotropic inhibition3 by pantoate in ps's 29 d2vcha1 not modelled 18.1 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 30 d2czca1 not modelled 18.0 20 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 31 c2eivH_ not modelled 17.1 17 PDB header:hydrolase Chain: H: PDB Molecule:arginase; PDBTitle: crystal structure of the arginase from thermus thermophilus 32 d1yira1 not modelled 17.1 28 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain 33 d1xi3a_ not modelled 16.8 17 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 34 c3itcA_ not modelled 16.7 18 PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol 35 c3os4A_ not modelled 16.1 28 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: the crystal structure of nicotinate phosphoribosyltransferase from2 yersinia pestis 36 d1ybea1 not modelled 16.0 31 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain 37 c2htmB_ not modelled 15.4 18 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 38 c3ihjA_ not modelled 14.7 14 PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp 39 d1pv8a_ not modelled 14.5 18 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 40 c2nydB_ not modelled 14.0 11 PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388 41 c1t9hA_ not modelled 13.2 12 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 42 d1l5oa_ not modelled 12.7 19 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 43 d1vlpa2 not modelled 12.6 16 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain 44 d1vhna_ not modelled 12.3 19 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 45 d1ihoa_ not modelled 12.2 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 46 c1ybeA_ not modelled 11.9 31 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase 47 c2x4bA_ not modelled 11.9 14 PDB header:hydrolase Chain: A: PDB Molecule:limit dextrinase; PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin 48 c2l1nA_ not modelled 11.4 54 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 49 c2im5C_ not modelled 11.1 31 PDB header:transferase Chain: C: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of nicotinate phosphoribosyltransferase2 from porphyromonas gingivalis 50 c3izcQ_ not modelled 10.9 25 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein rpl5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 51 c1y80A_ not modelled 10.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 52 d2g2ca1 not modelled 10.2 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 53 d2p12a1 not modelled 10.1 6 Fold:FomD barrel-like Superfamily:FomD-like Family:FomD-like 54 c2qgqF_ not modelled 10.0 10 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 55 d2bz1a1 not modelled 9.9 17 Fold:RibA-like Superfamily:RibA-like Family:RibA-like 56 d1tifa_ not modelled 9.7 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain 57 c2yybA_ not modelled 9.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1606; PDBTitle: crystal structure of ttha1606 from thermus thermophilus hb8 58 d1fj2a_ not modelled 9.5 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase/thioesterase 1 59 d2gx8a1 not modelled 9.4 10 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 60 d1itua_ not modelled 9.3 14 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Renal dipeptidase 61 d2gycm1 not modelled 8.7 14 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 62 d2c1ha1 not modelled 8.5 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 63 c3gmiA_ not modelled 8.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0348 protein mj0951; PDBTitle: crystal structure of a protein of unknown function from2 methanocaldococcus jannaschii 64 c2h90A_ not modelled 8.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:xenobiotic reductase a; PDBTitle: xenobiotic reductase a in complex with coumarin 65 c3qfeB_ not modelled 8.3 14 PDB header:lyase Chain: B: PDB Molecule:putative dihydrodipicolinate synthase family protein; PDBTitle: crystal structures of a putative dihydrodipicolinate synthase family2 protein from coccidioides immitis 66 d2c1xa1 not modelled 8.3 19 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 67 d1lj8a3 not modelled 8.2 26 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Mannitol 2-dehydrogenase 68 c3innB_ not modelled 8.0 20 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine-ligase in complex2 with atp at low occupancy at 2.1 a resolution 69 c3qy6A_ not modelled 8.0 11 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe; PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases 70 c2gx8B_ not modelled 7.9 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3 71 d3gcba_ not modelled 7.6 11 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like 72 d1r5ya_ not modelled 7.5 18 Fold:TIM beta/alpha-barrel Superfamily:tRNA-guanine transglycosylase Family:tRNA-guanine transglycosylase 73 d1hfel1 not modelled 7.5 21 Fold:Fe-only hydrogenase Superfamily:Fe-only hydrogenase Family:Fe-only hydrogenase 74 c3u5eL_ not modelled 7.5 13 PDB header:ribosome Chain: L: PDB Molecule:60s ribosomal protein l13-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 resolution 75 c1ps9A_ not modelled 7.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 76 d1iq8a1 not modelled 7.3 17 Fold:TIM beta/alpha-barrel Superfamily:tRNA-guanine transglycosylase Family:tRNA-guanine transglycosylase 77 d1d3va_ not modelled 7.3 13 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 78 c4a18U_ not modelled 7.2 22 PDB header:ribosome Chain: U: PDB Molecule:rpl13; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1 79 d2p10a1 not modelled 7.1 18 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Mll9387-like 80 c3obkH_ not modelled 6.6 20 PDB header:lyase Chain: H: PDB Molecule:delta-aminolevulinic acid dehydratase; PDBTitle: crystal structure of delta-aminolevulinic acid dehydratase2 (porphobilinogen synthase) from toxoplasma gondii me49 in complex3 with the reaction product porphobilinogen 81 d1ps9a1 not modelled 6.6 12 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 82 d1i5ga_ not modelled 6.5 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 83 c2p10D_ not modelled 6.2 18 PDB header:hydrolase Chain: D: PDB Molecule:mll9387 protein; PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution 84 d1o66a_ not modelled 6.1 19 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 85 c3g0tA_ not modelled 5.9 10 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution 86 c2wskA_ not modelled 5.8 20 PDB header:hydrolase Chain: A: PDB Molecule:glycogen debranching enzyme; PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12 87 d1zt2a1 not modelled 5.7 17 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:PriA-like 88 d2aeba1 not modelled 5.7 13 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 89 c2waqG_ not modelled 5.6 57 PDB header:transcription Chain: G: PDB Molecule:dna-directed rna polymerase rpo8 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase 90 c3s9xA_ not modelled 5.4 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asch domain; PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101 91 d1mkya3 not modelled 5.4 13 Fold:Alpha-lytic protease prodomain-like Superfamily:Probable GTPase Der, C-terminal domain Family:Probable GTPase Der, C-terminal domain 92 d1a3xa2 not modelled 5.4 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase 93 d1tqyb1 not modelled 5.3 8 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 94 c1m7xC_ not modelled 5.3 19 PDB header:transferase Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme; PDBTitle: the x-ray crystallographic structure of branching enzyme 95 d1x2ga2 not modelled 5.3 7 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 96 d1v33a_ not modelled 5.2 33 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:PriA-like 97 c2pc4B_ not modelled 5.1 19 PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: crystal structure of fructose-bisphosphate aldolase from plasmodium2 falciparum in complex with trap-tail determined at 2.4 angstrom3 resolution 98 d3tata_ not modelled 5.1 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 99 d1bj4a_ not modelled 5.1 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0