PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2im5C_

Fold library id	PDB Header	Molecule	Title
c2im5C_	PDB header: transferase	Chain: C: PDB Molecule: nicotinate phosphoribosyltransferase;	PDBTitle: crystal structure of nicotinate phosphoribosyltransferase2 from porphyromonas gingivalis

Links to external resources
Added to library: Tue Mar 16 13:22:01 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I I R S I L D T D L Y K F T T G Y A Y A K L F P R A Y G E F R F I D R N R Q G F T E E F A E L V R G E I R A M A A L S L T R D E K E F L Q R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S B
T T
T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E L P Y L P P I Y I D F L D G F R F D P E E V T V S I D A Q G H L D I R A Q G L L Y R V T L W E T P I L A V I S E L Y Y R F I G A E P D W K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
G G G
T T S
G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q V E E V T R S K G E L M R E H R A T F S I F G M R R R F S L E V E D R V T D I L K Q Y A G E S L F G T S N V H L A H K H G L R V S G T H P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G
S
S G G G S B T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence H E W I Q F H G A I Y G Y K M A N Y V A M E D W I N V Y D G D L G T V L T D T Y T T D V F M R N F S K K H A M L F T S L R H D S G D P E I F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T S S
T T
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence I E K A V R R Y E E L R V D P K I K Y I I F S D S L T P Q R A I E I Q K L C A G R I K A S F G I G T N L T N D V G G G V E P L N I V M K L W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G
S S
T T T S
S
S T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . .

Sequence K C K M T A K D D W H Y C V K L S D V D G K H T G E P E E I L L A M N T L G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S
B
S S T T
B S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	I	R	S	I	L	D	T	D	L	Y	K	F	T	T	G	Y	A	Y	A	K	L	F	P	R	A	Y	G	E	F	R	F	I	D	R	N	R	Q	G	F	T	E	E	F	A	E	L	V	R	G	E	I	R	A	M	A	A	L	S	L	T	R	D	E	K	E	F	L	Q	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		S	B															T	T										T	T																			G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	L	P	Y	L	P	P	I	Y	I	D	F	L	D	G	F	R	F	D	P	E	E	V	T	V	S	I	D	A	Q	G	H	L	D	I	R	A	Q	G	L	L	Y	R	V	T	L	W	E	T	P	I	L	A	V	I	S	E	L	Y	Y	R	F	I	G	A	E	P	D	W	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S															G	G	G							T	T	S														G	G	G																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	V	E	E	V	T	R	S	K	G	E	L	M	R	E	H	R	A	T	F	S	I	F	G	M	R	R	R	F	S	L	E	V	E	D	R	V	T	D	I	L	K	Q	Y	A	G	E	S	L	F	G	T	S	N	V	H	L	A	H	K	H	G	L	R	V	S	G	T	H	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T								G	G	G		S																S	G	G	G					S	B								T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	H	E	W	I	Q	F	H	G	A	I	Y	G	Y	K	M	A	N	Y	V	A	M	E	D	W	I	N	V	Y	D	G	D	L	G	T	V	L	T	D	T	Y	T	T	D	V	F	M	R	N	F	S	K	K	H	A	M	L	F	T	S	L	R	H	D	S	G	D	P	E	I	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T														T	T	S	S							T	T																								S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	I	E	K	A	V	R	R	Y	E	E	L	R	V	D	P	K	I	K	Y	I	I	F	S	D	S	L	T	P	Q	R	A	I	E	I	Q	K	L	C	A	G	R	I	K	A	S	F	G	I	G	T	N	L	T	N	D	V	G	G	G	V	E	P	L	N	I	V	M	K	L	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T			G	G	G							S	S														T	T	T	S												S			S	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Sequence	K	C	K	M	T	A	K	D	D	W	H	Y	C	V	K	L	S	D	V	D	G	K	H	T	G	E	P	E	E	I	L	L	A	M	N	T	L	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	T	T	S							B			S	S	T	T			B	S												T	T