Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	S	I	S	S	L	G	V	G	S	G	L	D	L	S	S	I	L	D	S	L	T	A	A	Q	K	A	T	L	T	P	I	S	N	Q	Q	S	S	F	T	A	K	L	S	A	Y	G	T	L	K	S	A	L	T	T	F	Q	T	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?																	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	T	A	L	S	K	A	D	L	F	S	A	T	S	T	T	S	S	T	T	A	F	S	A	T	T	A	G	N	A	I	A	G	K	Y	T	I	S	V	T	H	L	A	Q	A	Q	T	L	T	T	R	T	T	R	D	D	T	K	T	A
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?								?	?	?	?	?	?	?	?									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	A	T	S	D	S	K	L	T	I	Q	Q	G	G	D	K	D	P	I	T	I	D	I	S	A	A	N	S	S	L	S	G	I	R	D	A	I	N	N	A	K	A	G	V	S	A	S	I	I	N	V	G	N	G	E	Y	R	L	S	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																			?														?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	S	N	D	T	G	L	D	N	A	M	T	L	S	V	S	G	D	D	A	L	Q	S	F	M	G	Y	D	A	S	A	S	S	N	G	M	E	V	S	V	A	A	Q	N	A	Q	L	T	V	N	N	V	A	I	E	N	S	S	N	T
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?						?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	S	D	A	L	E	N	I	T	L	N	L	N	D	V	T	T	G	N	Q	T	L	T	I	T	Q	D	T	S	K	A	Q	T	A	I	K	D	W	V	N	A	Y	N	S	L	I	D	T	F	S	S	L	T	K	Y	T	A	V	D	A
Secondary structure
SS confidence
Disorder				?											?	?	?	?	?	?						?	?	?																											?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	A	D	S	Q	S	S	S	N	G	A	L	L	G	D	S	T	L	R	T	I	Q	T	Q	L	K	S	M	L	S	N	T	V	S	S	S	S	Y	K	T	L	A	Q	I	G	I	T	T	D	P	S	D	G	K	L	E	L	D	A	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?		?	?	?	?															?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		K	L	T	A	A	L	K	K	D	A	S	G	V	G	A	L	I	V	G	D	G	K	K	T	G	I	T	T	T	I	G	S	N	L	T	S	W	L	S	T	T	G	I	I	K	A	A	T	D	G	V	S	K	T	L	N	K	L	T	K
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?									?	?		?	?	?		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Sequence		D	Y	N	A	A	S	D	R	I	D	A	Q	V	A	R	Y	K	E	Q	F	T	Q	L	D	V	L	M	T	S	L	N	S	T	S	S	Y	L	T	Q	Q	F	E	N	N	S	N	S	K
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gk4 chain A Region: 408 - 468 Aligned: 61 Modelled: 61 Confidence: 89.0% Identity: 13% PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) Phyre2 PDB 1x8y chain A Region: 415 - 468 Aligned: 54 Modelled: 54 Confidence: 84.0% Identity: 7% PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b Phyre2 PDB 1ucu chain A Region: 387 - 461 Aligned: 75 Modelled: 75 Confidence: 80.9% Identity: 11% Fold: Phase 1 flagellin Superfamily: Phase 1 flagellin Family: Phase 1 flagellin Phyre2 PDB 3mov chain B Region: 416 - 468 Aligned: 53 Modelled: 53 Confidence: 78.0% Identity: 9% PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment Phyre2 PDB 1ei3 chain E Region: 353 - 465 Aligned: 103 Modelled: 113 Confidence: 77.7% Identity: 12% PDB header: PDB COMPND: Phyre2 PDB 1ik9 chain B Region: 366 - 459 Aligned: 87 Modelled: 94 Confidence: 73.2% Identity: 11% PDB header:gene regulation/ligase Chain: B: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of a xrcc4-dna ligase iv complex Phyre2 PDB 2pnv chain A Region: 409 - 452 Aligned: 37 Modelled: 44 Confidence: 69.8% Identity: 19% PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus Phyre2 PDB 1ei3 chain C Region: 402 - 464 Aligned: 63 Modelled: 63 Confidence: 63.0% Identity: 13% PDB header: PDB COMPND: Phyre2 PDB 2d4y chain A Region: 362 - 453 Aligned: 90 Modelled: 92 Confidence: 61.7% Identity: 10% PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) Phyre2 PDB 2zdi chain A Region: 404 - 438 Aligned: 35 Modelled: 35 Confidence: 55.6% Identity: 11% PDB header:chaperone Chain: A: PDB Molecule:prefoldin subunit beta; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 Phyre2 PDB 1fxk chain A Region: 402 - 450 Aligned: 48 Modelled: 49 Confidence: 52.8% Identity: 15% Fold: Long alpha-hairpin Superfamily: Prefoldin Family: Prefoldin Phyre2 PDB 1sfc chain D Region: 377 - 447 Aligned: 71 Modelled: 71 Confidence: 52.4% Identity: 8% PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex Phyre2 PDB 1deq chain O Region: 393 - 468 Aligned: 76 Modelled: 76 Confidence: 48.8% Identity: 12% PDB header: PDB COMPND: Phyre2 PDB 1l4a chain D Region: 377 - 447 Aligned: 71 Modelled: 71 Confidence: 47.5% Identity: 10% PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei Phyre2 PDB 3oja chain A Region: 388 - 462 Aligned: 75 Modelled: 75 Confidence: 45.0% Identity: 7% PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 3ghg chain D Region: 360 - 446 Aligned: 84 Modelled: 87 Confidence: 44.2% Identity: 11% PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen Phyre2 PDB 2gr7 chain C Region: 411 - 450 Aligned: 39 Modelled: 40 Confidence: 43.4% Identity: 18% PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 Phyre2 PDB 2gr7 chain A domain 1 Region: 411 - 450 Aligned: 39 Modelled: 40 Confidence: 43.4% Identity: 18% Fold: Pili subunits Superfamily: Pili subunits Family: YadA C-terminal domain-like Phyre2 PDB 3ghg chain K Region: 387 - 465 Aligned: 79 Modelled: 79 Confidence: 43.0% Identity: 9% PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen Phyre2 PDB 3swy chain B Region: 410 - 453 Aligned: 44 Modelled: 44 Confidence: 42.9% Identity: 14% PDB header:transport protein Chain: B: PDB Molecule:cyclic nucleotide-gated cation channel alpha-3; PDBTitle: cnga3 626-672 containing clz domain Phyre2 1 c1gk4A_ 2 c1x8yA_ 3 d1ucua_ 4 c3movB_ 5 c1ei3E_ 6 c1ik9B_ 7 c2pnvA_ 8 c1ei3C_ 9 c2d4yA_ 10 c2zdiA_ 11 d1fxka_ 12 c1sfcD_ 13 c1deqO_ 14 c1l4aD_ 15 c3ojaA_ 16 c3ghgD_ 17 c2gr7C_ 18 d2gr7a1 19 c3ghgK_ 20 c3swyB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1gk4A_ 89.0 13 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 2 c1x8yA_ 84.0 7 PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b 3 d1ucua_ 80.9 11 Fold:Phase 1 flagellin Superfamily:Phase 1 flagellin Family:Phase 1 flagellin 4 c3movB_ 78.0 9 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment 5 c1ei3E_ 77.7 12 PDB header: PDB COMPND: 6 c1ik9B_ 73.2 11 PDB header:gene regulation/ligase Chain: B: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of a xrcc4-dna ligase iv complex 7 c2pnvA_ 69.8 19 PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus 8 c1ei3C_ 63.0 13 PDB header: PDB COMPND: 9 c2d4yA_ 61.7 10 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 10 c2zdiA_ 55.6 11 PDB header:chaperone Chain: A: PDB Molecule:prefoldin subunit beta; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 11 d1fxka_ 52.8 15 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 12 c1sfcD_ 52.4 8 PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex 13 c1deqO_ 48.8 12 PDB header: PDB COMPND: 14 c1l4aD_ 47.5 10 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 15 c3ojaA_ 45.0 7 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 16 c3ghgD_ 44.2 11 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 17 c2gr7C_ 43.4 18 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 18 d2gr7a1 43.4 18 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 19 c3ghgK_ 43.0 9 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 20 c3swyB_ 42.9 14 PDB header:transport protein Chain: B: PDB Molecule:cyclic nucleotide-gated cation channel alpha-3; PDBTitle: cnga3 626-672 containing clz domain 21 c1deqF_ not modelled 42.3 8 PDB header: PDB COMPND: 22 c1kzzA_ not modelled 37.0 12 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: downstream regulator tank binds to the cd40 recognition2 site on traf3 23 c2npsD_ not modelled 36.3 13 PDB header:transport protein Chain: D: PDB Molecule:syntaxin-6; PDBTitle: crystal structure of the early endosomal snare complex 24 c2zdiC_ not modelled 30.9 11 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 25 c1fllA_ not modelled 29.4 13 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: molecular basis for cd40 signaling mediated by traf3 26 c3k8vB_ not modelled 27.3 12 PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c20 27 c1m1jA_ not modelled 26.7 9 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 28 c1zxaB_ not modelled 24.8 10 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 29 c1r48A_ not modelled 22.4 7 PDB header:transport protein Chain: A: PDB Molecule:proline/betaine transporter; PDBTitle: solution structure of the c-terminal cytoplasmic domain2 residues 468-497 of escherichia coli protein prop 30 c3b5nL_ not modelled 22.2 17 PDB header:membrane protein Chain: L: PDB Molecule:protein transport protein sec9; PDBTitle: structure of the yeast plasma membrane snare complex 31 c2j69D_ not modelled 22.2 7 PDB header:hydrolase Chain: D: PDB Molecule:bacterial dynamin-like protein; PDBTitle: bacterial dynamin-like protein bdlp 32 c2ayuA_ not modelled 21.9 13 PDB header:chaperone Chain: A: PDB Molecule:nucleosome assembly protein; PDBTitle: the structure of nucleosome assembly protein suggests a mechanism for2 histone binding and shuttling 33 d2ayua1 not modelled 21.9 13 Fold:NAP-like Superfamily:NAP-like Family:NAP-like 34 c1aq5C_ not modelled 20.8 24 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 35 d2j0na1 not modelled 20.4 13 Fold:IpaD-like Superfamily:IpaD-like Family:IpaD-like 36 c2nrjA_ not modelled 20.4 12 PDB header:toxin Chain: A: PDB Molecule:hbl b protein; PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus 37 c1ca9D_ not modelled 19.0 3 PDB header:tnf signaling Chain: D: PDB Molecule:protein (tnf receptor associated factor 2); PDBTitle: structure of tnf receptor associated factor 2 in complex2 with a peptide from tnf-r2 38 d1fxkc_ not modelled 18.3 5 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 39 c1gl2D_ not modelled 17.3 8 PDB header:membrane protein Chain: D: PDB Molecule:syntaxin 8; PDBTitle: crystal structure of an endosomal snare core complex 40 c2zvfG_ not modelled 16.8 7 PDB header:ligase Chain: G: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase c-terminal dimerization domain 41 c2fxmB_ not modelled 16.3 13 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 42 d1z0pa1 not modelled 15.6 16 Fold:Long alpha-hairpin Superfamily:SPy1572-like Family:SPy1572-like 43 c3bvhE_ not modelled 14.7 15 PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 44 c2oqqB_ not modelled 14.4 16 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 45 c3ci9B_ not modelled 14.2 14 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 46 d1ivsa1 not modelled 14.2 13 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 47 c2z5hB_ not modelled 13.8 20 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt 48 c1l8dB_ not modelled 11.4 12 PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook 49 c1htmB_ not modelled 11.3 7 PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin ha2 chain; PDBTitle: structure of influenza haemagglutinin at the ph of membrane2 fusion 50 c2oszA_ not modelled 11.1 12 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 51 d1owaa_ not modelled 11.1 7 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 52 c3ibpA_ not modelled 10.9 23 PDB header:cell cycle Chain: A: PDB Molecule:chromosome partition protein mukb; PDBTitle: the crystal structure of the dimerization domain of escherichia coli2 structural maintenance of chromosomes protein mukb 53 c3swfA_ not modelled 10.7 13 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 54 d1wa8b1 not modelled 10.5 18 Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like 55 c2akfB_ not modelled 9.4 10 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 56 c2akfA_ not modelled 9.4 10 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 57 c2akfC_ not modelled 9.4 10 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 58 c3f6hA_ not modelled 8.8 13 PDB header:transferase Chain: A: PDB Molecule:alpha-isopropylmalate synthase; PDBTitle: crystal structure of the regulatory domain of licms in2 complexed with isoleucine - type iii 59 c2xdjF_ not modelled 8.7 13 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 60 c2xzrA_ not modelled 7.6 13 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 61 c3ipkA_ not modelled 7.4 11 PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans 62 c3bvhC_ not modelled 7.4 6 PDB header:blood clotting Chain: C: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 63 c3l9oA_ not modelled 7.0 14 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome 64 d1hq1a_ not modelled 6.9 22 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 65 c2dq3A_ not modelled 6.9 13 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 66 c2hpcH_ not modelled 6.8 11 PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 67 c2d3eD_ not modelled 6.8 11 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 68 c3na7A_ not modelled 6.7 5 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 69 d2azeb1 not modelled 6.7 9 Fold:E2F-DP heterodimerization region Superfamily:E2F-DP heterodimerization region Family:E2F dimerization segment 70 c3dtpA_ not modelled 6.6 13 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 71 c1x59A_ not modelled 6.5 20 PDB header:protein binding Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: solution structures of the whep-trs domain of human2 histidyl-trna synthetase 72 c2gtlO_ not modelled 6.5 15 PDB header:oxygen storage/transport Chain: O: PDB Molecule:extracellular hemoglobin linker l3 subunit; PDBTitle: lumbricus erythrocruorin at 3.5a resolution 73 d1e52a_ not modelled 6.5 15 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 74 d1jyoa_ not modelled 6.4 18 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 75 c1dlcA_ not modelled 6.4 11 PDB header:toxin Chain: A: PDB Molecule:delta-endotoxin cryiiia; PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution 76 c2h3sB_ not modelled 6.4 25 PDB header:de novo protein Chain: B: PDB Molecule:pancreatic hormone; PDBTitle: cis-azobenzene-avian pancreatic polypeptide bound to dpc2 micelles 77 c2h4bC_ not modelled 6.4 25 PDB header:de novo protein Chain: C: PDB Molecule:pancreatic hormone; PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide 78 c2h3tB_ not modelled 6.4 25 PDB header:de novo protein Chain: B: PDB Molecule:pancreatic hormone; PDBTitle: trans-(4-aminomethyl)phenylazobenzoic acid-app bound to dpc2 micelles 79 c2h4bD_ not modelled 6.4 25 PDB header:de novo protein Chain: D: PDB Molecule:pancreatic hormone; PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide 80 d1r6fa_ not modelled 6.3 15 Fold:Virulence-associated V antigen Superfamily:Virulence-associated V antigen Family:Virulence-associated V antigen 81 c2ym9C_ not modelled 6.3 11 PDB header:cell invasion Chain: C: PDB Molecule:cell invasion protein sipd; PDBTitle: sipd from salmonella typhimurium 82 c2k48A_ not modelled 6.2 24 PDB header:viral protein Chain: A: PDB Molecule:nucleoprotein; PDBTitle: nmr structure of the n-terminal coiled coil domain of the2 andes hantavirus nucleocapsid protein 83 c3rrkA_ not modelled 6.2 5 PDB header:proton transport Chain: A: PDB Molecule:v-type atpase 116 kda subunit; PDBTitle: crystal structure of the cytoplasmic n-terminal domain of subunit i,2 homolog of subunit a, of v-atpase 84 d1w8oa1 not modelled 6.1 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 85 c3g9rF_ not modelled 6.1 0 PDB header:viral protein Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation 86 c1jsdB_ not modelled 6.1 17 PDB header:viral protein Chain: B: PDB Molecule:haemagglutinin (ha2 chain); PDBTitle: crystal structure of swine h9 haemagglutinin 87 d2okua1 not modelled 6.0 10 Fold:N-cbl like Superfamily:PG0775 C-terminal domain-like Family:PG0775 C-terminal domain-like 88 c2v71A_ not modelled 6.0 13 PDB header:nuclear protein Chain: A: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: coiled-coil region of nudel 89 c2hpcF_ not modelled 5.9 14 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 90 c1bf5A_ not modelled 5.9 8 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 91 c2ykqC_ not modelled 5.8 11 PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer 92 c3bj4B_ not modelled 5.8 9 PDB header:signaling protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction 93 c3mtuE_ not modelled 5.8 16 PDB header:contractile protein Chain: E: PDB Molecule:head morphogenesis protein, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle 94 c2ic6B_ not modelled 5.7 22 PDB header:viral protein Chain: B: PDB Molecule:nucleocapsid protein; PDBTitle: the coiled-coil domain (residues 1-75) structure of the sin2 nombre virus nucleocapsid protein 95 c1ezjA_ not modelled 5.6 13 PDB header:viral protein, transferase Chain: A: PDB Molecule:nucleocapsid phosphoprotein; PDBTitle: crystal structure of the multimerization domain of the phosphoprotein2 from sendai virus 96 c2ym0B_ not modelled 5.6 12 PDB header:cell invasion Chain: B: PDB Molecule:cell invasion protein sipd; PDBTitle: truncated sipd from salmonella typhimurium 97 c1t6zB_ not modelled 5.5 17 PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 98 c1ic2B_ not modelled 5.4 18 PDB header:contractile protein Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle; PDBTitle: deciphering the design of the tropomyosin molecule 99 c3hfeC_ not modelled 5.4 14 PDB header:transport protein Chain: C: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1; PDBTitle: a trimeric form of the kv7.1 a domain tail

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0