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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3bvhE_

Fold library idPDB HeaderMoleculeTitle
c3bvhE_PDB header: blood clottingChain: E: PDB Molecule: fibrinogen beta chain;PDBTitle: crystal structure of recombinant gammad364a fibrinogen2 fragment d with the peptide ligand gly-pro-arg-pro-amide


Added to library: Tue Mar 16 13:26:06 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPD
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Known secondary structure (DSSP)

STTTTTS








S

BSSTT

S

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGNDKIS
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Known secondary structure (DSSP) TTS


SGGGS
SSS
S






S

SSSSS





 .........150.........160.........170.........180.........190.........200.........210
Sequence QLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIH
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Known secondary structure (DSSP) TTS

TTS


GGGTT


SS

TTTS

TTS
TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence NGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNW
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Known secondary structure (DSSP) TT


BBTTB


S


S
TT

TTS
B

SSS
STTS


TTSB

TTTSTTSS

SS
 .........290........
Sequence KGSWYSMRKMSMKIRPFF
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Known secondary structure (DSSP) BSSB

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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