PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2ym9C_

Fold library id	PDB Header	Molecule	Title
c2ym9C_	PDB header: cell invasion	Chain: C: PDB Molecule: cell invasion protein sipd;	PDBTitle: sipd from salmonella typhimurium

Links to external resources
Added to library: Sat Aug 20 09:47:23 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T I S D A E I W D M V S Q N I S A I G D S Y L G V Y E N V V A V Y T D F Y Q A F S D I L S K M G G W L L P G K D G N T V K L D V T S L K N D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S S T T T S S T T T
S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L N S L V N K Y N Q I N S N T V L F P A Q S G S G V K V A T E A E A R Q W L S E L N L P N S C L K S Y G S G Y V V T V D L T P L Q K M V Q D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S T T T S
S S S
B
T T
G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I D G L G A P G K D S K L E M D N A K Y Q A W Q S G F K A Q E E N M K T T L Q T L T Q K Y S N A N S L Y D N L V K V L S S T I S S S L E T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S

. . . . . .

Sequence K S F L Q G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	I	S	D	A	E	I	W	D	M	V	S	Q	N	I	S	A	I	G	D	S	Y	L	G	V	Y	E	N	V	V	A	V	Y	T	D	F	Y	Q	A	F	S	D	I	L	S	K	M	G	G	W	L	L	P	G	K	D	G	N	T	V	K	L	D	V	T	S	L	K	N	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T	T					S	S	T																						T	T	S	S	T	T	T					S	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	N	S	L	V	N	K	Y	N	Q	I	N	S	N	T	V	L	F	P	A	Q	S	G	S	G	V	K	V	A	T	E	A	E	A	R	Q	W	L	S	E	L	N	L	P	N	S	C	L	K	S	Y	G	S	G	Y	V	V	T	V	D	L	T	P	L	Q	K	M	V	Q	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S		S	T	T	T				S				S	S	S				B												T	T			G	G	G					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	D	G	L	G	A	P	G	K	D	S	K	L	E	M	D	N	A	K	Y	Q	A	W	Q	S	G	F	K	A	Q	E	E	N	M	K	T	T	L	Q	T	L	T	Q	K	Y	S	N	A	N	S	L	Y	D	N	L	V	K	V	L	S	S	T	I	S	S	S	L	E	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	S						S	S
	.	.	.	.	.	.
Sequence	K	S	F	L	Q	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)