Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP09831
DateWed Jan 25 15:20:14 GMT 2012
Unique Job ID722e2134c401d045

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2vdcF_
Top template information
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
Confidence and coverage
Confidence:100.0% Coverage: 98%
1453 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQ
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???
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   .........70.........80.........90.........100.........110.........120
Sequence  KPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIVEEELQRETLSIVGWRDVP
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   .........130.........140.........150.........160.........170.........180
Sequence  TNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIARRRIEKRLEADKDFYVCSLS
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??

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   .........190.........200.........210.........220.........230.........240
Sequence  NLVNIYKGLCMPTDLPRFYLDLADLRLESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGE
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   .........250.........260.........270.........280.........290.........300
Sequence  INTITGNRQWARARTYKFQTPLIPDLHDAAPFVNETGSDSSSMDNMLELLLAGGMDIIRA
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   .........310.........320.........330.........340.........350.........360
Sequence  MRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWDGPAGIVMSDGRFAACNLDRNGLRPAR
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?
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   .........370.........380.........390.........400.........410.........420
Sequence  YVITKDKLITCASEVGIWDYQPDEVVEKGRVGPGELMVIDTRSGRILHSAETDDDLKSRH
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   .........430.........440.........450.........460.........470.........480
Sequence  PYKEWMEKNVRRLVPFEDLPDEEVGSRELDDDTLASYQKQFNYSAEELDSVIRVLGENGQ
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   .........490.........500.........510.........520.........530.........540
Sequence  EAVGSMGDDTPFAVLSSQPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLATSIGREMNVF
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   .........550.........560.........570.........580.........590.........600
Sequence  CEAEGQAHRLSFKSPILLYSDFKQLTTMKEEHYRADTLDITFDVTKTTLEATVKELCDKA
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   .........610.........620.........630.........640.........650.........660
Sequence  EKMVRSGTVLLVLSDRNIAKDRLPVPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPH
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   .........670.........680.........690.........700.........710.........720
Sequence  HFAVLLGFGATAIYPYLAYETLGRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGIS
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   .........730.........740.........750.........760.........770.........780
Sequence  TIASYRCSKLFEAVGLHDDVVGLCFQGAVSRIGGASFEDFQQDLLNLSKRAWLARKPISQ
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   .........790.........800.........810.........820.........830.........840
Sequence  GGLLKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGE
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   .........850.........860.........870.........880.........890.........900
Sequence  NAVNIADVEPASELFKRFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYG
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   .........910.........920.........930.........940.........950.........960
Sequence  TNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSV
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  PGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADL
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  ITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDII
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  KAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYF
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  EFIARETRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHPGKALY
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  CTENNPPFDNGLLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQG
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  LAADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCILGK
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  TGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLSVDALAIHEEHLRGLITEHVQHTGS
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   .........1450.........1460.........1470.........1480......
Sequence  QRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2vdc chain F

3D model

Region: 12 - 1472
Aligned: 1453
Modelled: 1453
Confidence: 100.0%
Identity: 45%
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.

Phyre2

PDB 1lm1 chain A

3D model

Region: 12 - 1469
Aligned: 1421
Modelled: 1421
Confidence: 100.0%
Identity: 47%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase;
PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme

Phyre2

PDB 1ofd chain A domain 2

3D model

Region: 443 - 1204
Aligned: 753
Modelled: 762
Confidence: 100.0%
Identity: 48%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1ea0 chain A domain 2

3D model

Region: 430 - 1184
Aligned: 752
Modelled: 755
Confidence: 100.0%
Identity: 47%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1ea0 chain A domain 3

3D model

Region: 12 - 428
Aligned: 414
Modelled: 414
Confidence: 100.0%
Identity: 43%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2

PDB 1ofd chain A domain 3

3D model

Region: 12 - 433
Aligned: 420
Modelled: 422
Confidence: 100.0%
Identity: 43%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2

PDB 1ea0 chain A domain 1

3D model

Region: 1205 - 1472
Aligned: 265
Modelled: 268
Confidence: 100.0%
Identity: 45%
Fold: Single-stranded right-handed beta-helix
Superfamily: Alpha subunit of glutamate synthase, C-terminal domain
Family: Alpha subunit of glutamate synthase, C-terminal domain

Phyre2

PDB 1ofd chain A domain 1

3D model

Region: 1207 - 1472
Aligned: 262
Modelled: 266
Confidence: 100.0%
Identity: 49%
Fold: Single-stranded right-handed beta-helix
Superfamily: Alpha subunit of glutamate synthase, C-terminal domain
Family: Alpha subunit of glutamate synthase, C-terminal domain

Phyre2

PDB 1p0k chain A

3D model

Region: 832 - 1187
Aligned: 286
Modelled: 314
Confidence: 99.9%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1ecj chain B

3D model

Region: 155 - 409
Aligned: 216
Modelled: 222
Confidence: 99.9%
Identity: 24%
PDB header:transferase
Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate
PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer

Phyre2

PDB 1tb3 chain A domain 1

3D model

Region: 799 - 1170
Aligned: 313
Modelled: 341
Confidence: 99.9%
Identity: 16%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1gph chain 1

3D model

Region: 12 - 400
Aligned: 209
Modelled: 227
Confidence: 99.9%
Identity: 29%
PDB header:transferase(glutamine amidotransferase)
Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase;
PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis

Phyre2

PDB 2e77 chain B

3D model

Region: 785 - 1175
Aligned: 342
Modelled: 363
Confidence: 99.8%
Identity: 15%
PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate oxidase;
PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex

Phyre2

PDB 1ecf chain A domain 2

3D model

Region: 155 - 407
Aligned: 214
Modelled: 220
Confidence: 99.8%
Identity: 23%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2

PDB 1vrd chain A domain 1

3D model

Region: 830 - 1172
Aligned: 282
Modelled: 303
Confidence: 99.8%
Identity: 21%
Fold: TIM beta/alpha-barrel
Superfamily: Inosine monophosphate dehydrogenase (IMPDH)
Family: Inosine monophosphate dehydrogenase (IMPDH)

Phyre2

PDB 2rdu chain A

3D model

Region: 834 - 1162
Aligned: 283
Modelled: 301
Confidence: 99.8%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyacid oxidase 1;
PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate

Phyre2

PDB 1gox chain A

3D model

Region: 834 - 1168
Aligned: 284
Modelled: 307
Confidence: 99.8%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 2cu0 chain A domain 1

3D model

Region: 818 - 1172
Aligned: 311
Modelled: 336
Confidence: 99.8%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: Inosine monophosphate dehydrogenase (IMPDH)
Family: Inosine monophosphate dehydrogenase (IMPDH)

Phyre2

PDB 1p4c chain A

3D model

Region: 796 - 1170
Aligned: 322
Modelled: 334
Confidence: 99.8%
Identity: 16%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1kbi chain A domain 1

3D model

Region: 793 - 1173
Aligned: 336
Modelled: 346
Confidence: 99.8%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2
1

c2vdcF_
2

c1lm1A_
3

d1ofda2
4

d1ea0a2
5

d1ea0a3
6

d1ofda3
7

d1ea0a1
8

d1ofda1
9

d1p0ka_
10

c1ecjB_
11

d1tb3a1
12

c1gph1_
13

c2e77B_
14

d1ecfa2
15

d1vrda1
16

c2rduA_
17

d1goxa_
18

d2cu0a1
19

d1p4ca_
20

d1kbia1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2vdcF_



100.0 45 PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
2c1lm1A_



100.0 47 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase;
PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme
3d1ofda2



100.0 48 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
4d1ea0a2



100.0 47 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
5d1ea0a3



100.0 43 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
6d1ofda3



100.0 43 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
7d1ea0a1



100.0 45 Fold:Single-stranded right-handed beta-helix
Superfamily:Alpha subunit of glutamate synthase, C-terminal domain
Family:Alpha subunit of glutamate synthase, C-terminal domain
8d1ofda1



100.0 49 Fold:Single-stranded right-handed beta-helix
Superfamily:Alpha subunit of glutamate synthase, C-terminal domain
Family:Alpha subunit of glutamate synthase, C-terminal domain
9d1p0ka_



99.9 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
10c1ecjB_



99.9 24 PDB header:transferase
Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate
PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer
11d1tb3a1



99.9 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
12c1gph1_



99.9 29 PDB header:transferase(glutamine amidotransferase)
Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase;
PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis
13c2e77B_



99.8 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate oxidase;
PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex
14d1ecfa2



99.8 23 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
15d1vrda1



99.8 21 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
16c2rduA_



99.8 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyacid oxidase 1;
PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate
17d1goxa_



99.8 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
18d2cu0a1



99.8 19 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
19d1p4ca_



99.8 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
20d1kbia1



99.8 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
21d1gph12



not modelled 99.8 27 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
22c2cu0B_



not modelled 99.8 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase from2 pyrococcus horikoshii ot3
23d1eepa_



not modelled 99.8 17 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
24c1vrdA_



not modelled 99.8 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase (tm1347)2 from thermotoga maritima at 2.18 a resolution
25d1xffa_



not modelled 99.8 20 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
26d1pvna1



not modelled 99.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
27c1ypfB_



not modelled 99.7 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:gmp reductase;
PDBTitle: crystal structure of guac (ba5705) from bacillus anthracis at 1.8 a2 resolution
28c2a7nA_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:l(+)-mandelate dehydrogenase;
PDBTitle: crystal structure of the g81a mutant of the active chimera of (s)-2 mandelate dehydrogenase
29c2zrvC_



not modelled 99.7 19 PDB header:isomerase
Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase;
PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn.
30c3r2gA_



not modelled 99.7 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine 5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine 5' monophosphate dehydrogenase from2 legionella pneumophila
31c3khjE_



not modelled 99.7 19 PDB header:oxidoreductase
Chain: E: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: c. parvum inosine monophosphate dehydrogenase bound by inhibitor c64
32d1jr1a1



not modelled 99.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
33c3ffsC_



not modelled 99.7 19 PDB header:oxidoreductase
Chain: C: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: the crystal structure of cryptosporidium parvum inosine-5'-2 monophosphate dehydrogenase
34d1vcfa1



not modelled 99.7 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
35c1kbiB_



not modelled 99.7 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome b2;
PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme
36c1me9A_



not modelled 99.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh) from2 tritrichomonas foetus with imp bound
37c2a7rD_



not modelled 99.6 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:gmp reductase 2;
PDBTitle: crystal structure of human guanosine monophosphate2 reductase 2 (gmpr2)
38c1jxaA_



not modelled 99.5 21 PDB header:transferase
Chain: A: PDB Molecule:glucosamine 6-phosphate synthase;
PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate
39d1zfja1



not modelled 99.5 15 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
40c2cdh1_



not modelled 99.5 21 PDB header:transferase
Chain: 1: PDB Molecule:enoyl reductase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.
41c1jcnA_



not modelled 99.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase i;
PDBTitle: binary complex of human type-i inosine monophosphate dehydrogenase2 with 6-cl-imp
42d1juba_



not modelled 99.4 20 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
43c2qr6A_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:imp dehydrogenase/gmp reductase;
PDBTitle: crystal structure of imp dehydrogenase/gmp reductase-like protein2 (np_599840.1) from corynebacterium glutamicum atcc 13032 kitasato at3 1.50 a resolution
44d1jcna1



not modelled 99.4 17 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
45c3oixA_



not modelled 99.1 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative dihydroorotate dehydrogenase; dihydroorotate
PDBTitle: crystal structure of the putative dihydroorotate dehydrogenase from2 streptococcus mutans
46c2fptA_



not modelled 99.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial;
PDBTitle: dual binding mode of a novel series of dhodh inhibitors
47c3bw2A_



not modelled 98.9 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitropropane dioxygenase;
PDBTitle: crystal structures and site-directed mutagenesis study of nitroalkane2 oxidase from streptomyces ansochromogenes
48d1d3ga_



not modelled 98.9 18 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
49d1uuma_



not modelled 98.9 21 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
50d1te5a_



not modelled 98.8 20 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
51c3mdnD_



not modelled 98.8 16 PDB header:transferase
Chain: D: PDB Molecule:glutamine aminotransferase class-ii domain protein;
PDBTitle: structure of glutamine aminotransferase class-ii domain protein2 (spo2029) from silicibacter pomeroyi
52c1tv5A_



not modelled 98.7 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase homolog, mitochondrial;
PDBTitle: plasmodium falciparum dihydroorotate dehydrogenase with a bound2 inhibitor
53d1tv5a1



not modelled 98.7 21 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
54c1zfjA_



not modelled 98.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
55d1ct9a2



not modelled 98.6 23 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
56d2b4ga1



not modelled 98.6 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
57c3gyeA_



not modelled 98.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, putative;
PDBTitle: didydroorotate dehydrogenase from leishmania major
58d1ep3a_



not modelled 98.6 22 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
59c2z6jB_



not modelled 98.6 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:trans-2-enoyl-acp reductase ii;
PDBTitle: crystal structure of s. pneumoniae enoyl-acyl carrier2 protein reductase (fabk) in complex with an inhibitor
60c2gjlA_



not modelled 98.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein pa1024;
PDBTitle: crystal structure of 2-nitropropane dioxygenase
61c1ct9D_



not modelled 98.5 23 PDB header:ligase
Chain: D: PDB Molecule:asparagine synthetase b;
PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli
62c3bo9B_



not modelled 98.2 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nitroalkan dioxygenase;
PDBTitle: crystal structure of putative nitroalkan dioxygenase (tm0800) from2 thermotoga maritima at 2.71 a resolution
63d1jgta2



not modelled 97.7 23 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
64d1f76a_



not modelled 97.6 15 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
65d1gtea2



not modelled 97.6 10 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
66c2htmB_



not modelled 97.5 18 PDB header:biosynthetic protein
Chain: B: PDB Molecule:thiazole biosynthesis protein thig;
PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8
67d1wv2a_



not modelled 97.5 20 Fold:TIM beta/alpha-barrel
Superfamily:ThiG-like
Family:ThiG-like
68c1m1zB_



not modelled 97.2 21 PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactam synthetase;
PDBTitle: beta-lactam synthetase apo enzyme
69c1gthD_



not modelled 96.9 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
70d1vhna_



not modelled 96.8 23 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
71c2c3zA_



not modelled 96.7 19 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
72d1l6wa_



not modelled 96.7 23 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
73d1n7ka_



not modelled 96.5 21 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
74d1yxya1



not modelled 96.5 22 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
75d1o0ya_



not modelled 96.4 24 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
76d1y0ea_



not modelled 96.4 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
77d1xm3a_



not modelled 96.3 22 Fold:TIM beta/alpha-barrel
Superfamily:ThiG-like
Family:ThiG-like
78c3qjaA_



not modelled 96.1 22 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
79d1mzha_



not modelled 96.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
80d1ub3a_



not modelled 95.9 21 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
81c2h90A_



not modelled 95.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin
82c3oa3A_



not modelled 95.9 25 PDB header:lyase
Chain: A: PDB Molecule:aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis
83c3gr7A_



not modelled 95.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form
84d1a53a_



not modelled 95.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
85c3hf3A_



not modelled 95.8 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
86d1p1xa_



not modelled 95.7 27 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
87c3ng3A_



not modelled 95.7 26 PDB header:lyase
Chain: A: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde
88d1geqa_



not modelled 95.5 12 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
89c1q15A_



not modelled 95.5 21 PDB header:biosynthetic protein
Chain: A: PDB Molecule:cara;
PDBTitle: carbapenam synthetase
90d1qopa_



not modelled 95.5 18 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
91c3q58A_



not modelled 95.4 16 PDB header:isomerase
Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase;
PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica
92c3b0vD_



not modelled 95.3 8 PDB header:oxidoreductase/rna
Chain: D: PDB Molecule:trna-dihydrouridine synthase;
PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna
93c3ngjC_



not modelled 95.2 29 PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica
94d1rd5a_



not modelled 95.1 19 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
95c1djnB_



not modelled 95.1 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
96d1ps9a1



not modelled 94.8 13 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
97c3igsB_



not modelled 94.7 18 PDB header:isomerase
Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2;
PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase
98c1ps9A_



not modelled 94.4 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
99d1z41a1



not modelled 94.2 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
100d1djqa1



not modelled 94.1 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
101c3pajA_



not modelled 94.1 27 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating;
PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961
102d1vyra_



not modelled 94.1 15 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
103d1wx0a1



not modelled 94.0 23 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
104c3kruC_



not modelled 94.0 22 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39
105d1q15a2



not modelled 93.3 20 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
106c3tdmD_



not modelled 93.2 23 PDB header:de novo protein
Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel
PDBTitle: computationally designed tim-barrel protein, halfflr
107d1w0ma_



not modelled 93.1 16 Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
108d1qapa1



not modelled 93.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
109c3qyqC_



not modelled 93.0 18 PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase, putative;
PDBTitle: 1.8 angstrom resolution crystal structure of a putative deoxyribose-2 phosphate aldolase from toxoplasma gondii me49
110d1vcva1



not modelled 93.0 11 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
111d1hg3a_



not modelled 92.8 21 Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
112d2a4aa1



not modelled 92.6 24 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
113c3s1vD_



not modelled 92.4 16 PDB header:transferase
Chain: D: PDB Molecule:probable transaldolase;
PDBTitle: transaldolase from thermoplasma acidophilum in complex with d-fructose2 6-phosphate schiff-base intermediate
114c2a4aB_



not modelled 92.1 21 PDB header:lyase
Chain: B: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: deoxyribose-phosphate aldolase from p. yoelii
115d1qe5a_



not modelled 92.1 16 Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
116c3k30B_



not modelled 91.7 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
117d1tqxa_



not modelled 91.3 21 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
118d1j5ta_



not modelled 91.1 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
119d1vpxa_



not modelled 90.8 21 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
120c1x1oC_



not modelled 90.6 29 PDB header:transferase
Chain: C: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of project id tt0268 from thermus thermophilus hb8

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0