PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2a4aB_

Fold library id	PDB Header	Molecule	Title
c2a4aB_	PDB header: lyase	Chain: B: PDB Molecule: deoxyribose-phosphate aldolase;	PDBTitle: deoxyribose-phosphate aldolase from p. yoelii

Links to external resources
Added to library: Tue Mar 16 13:32:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N Y T E K F A A W S V I C L T D H T F L D E N G T E D D I R E L C N E S V K T C P F A A A V C V Y P K F V K F I N E K I K Q E I N P F K P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T S S S S
S
G G G S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I A C V I N F P Y G T D S M E K V L N D T E K A L D D G A D E I D L V I N Y K K I I E N T D E G L K E A T K L T Q S V K K L L T N K I L K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T
S
T
S
S T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I I E V G E L K T E D L I I K T T L A V L N G N A D F I K T S T G K V Q I N A T P S S V E Y I I K A I K E Y I K N N P E K N N K I G L K V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T
S
S
S S
G G G T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . .

Sequence G G I S D L N T A S H Y I L L A R R F L F R I G S S S L V I K L R K V I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	Y	T	E	K	F	A	A	W	S	V	I	C	L	T	D	H	T	F	L	D	E	N	G	T	E	D	D	I	R	E	L	C	N	E	S	V	K	T	C	P	F	A	A	A	V	C	V	Y	P	K	F	V	K	F	I	N	E	K	I	K	Q	E	I	N	P	F	K	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T								T	T													T	T	S	S	S	S			S						G	G	G												S	S	S			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	A	C	V	I	N	F	P	Y	G	T	D	S	M	E	K	V	L	N	D	T	E	K	A	L	D	D	G	A	D	E	I	D	L	V	I	N	Y	K	K	I	I	E	N	T	D	E	G	L	K	E	A	T	K	L	T	Q	S	V	K	K	L	L	T	N	K	I	L	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	T	T	T			S																T		S														S																			T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	I	E	V	G	E	L	K	T	E	D	L	I	I	K	T	T	L	A	V	L	N	G	N	A	D	F	I	K	T	S	T	G	K	V	Q	I	N	A	T	P	S	S	V	E	Y	I	I	K	A	I	K	E	Y	I	K	N	N	P	E	K	N	N	K	I	G	L	K	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S													T	T	T		S							S		S	S																							G	G	G	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Sequence	G	G	I	S	D	L	N	T	A	S	H	Y	I	L	L	A	R	R	F	L	F	R	I	G	S	S	S	L	V	I	K	L	R	K	V	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S			S																					S	S