PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3mdnD_

Fold library id	PDB Header	Molecule	Title
c3mdnD_	PDB header: transferase	Chain: D: PDB Molecule: glutamine amidotransferases class-ii domain protein;	PDBTitle: structure of glutamine amidotransferases class-ii domain protein2 (spo2029) from silicibacter pomeroyi

Links to external resources
Added to library: Sat Aug 28 23:35:57 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence C R W A A Y H G T P I F L E D V I F G V A W Y D A R P E P G L Y R D V Y P A W S D P N L R A V A H H V R S G L F L S H V N N C H P F A A R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T
S S S S S
S S
T T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W C F X H N G Q V G G F E A F R K Q A D X A I A D E F Y T Y R K G S T D S E V L F L L A L S E G L E H D P H G A L A R A I A R L E G L S R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G G T S
T T
S
T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H G T T P H X R L S A A F S D G Q T L Y A A R Y S S D H I A P S V Y Y R Y S H A R Q G W A V V S E P L E T D E G D W T E L R P G R X L T I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S
S S
S S S
T T T T S S
S S
T T

. . . . . . . . . 220 . . .

Sequence A E G A A E R D F A P A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	C	R	W	A	A	Y	H	G	T	P	I	F	L	E	D	V	I	F	G	V	A	W	Y	D	A	R	P	E	P	G	L	Y	R	D	V	Y	P	A	W	S	D	P	N	L	R	A	V	A	H	H	V	R	S	G	L	F	L	S	H	V	N	N	C	H	P	F	A	A	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													G	G	G	T								S	S	S	S	S							S	S		T	T	T																								S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	C	F	X	H	N	G	Q	V	G	G	F	E	A	F	R	K	Q	A	D	X	A	I	A	D	E	F	Y	T	Y	R	K	G	S	T	D	S	E	V	L	F	L	L	A	L	S	E	G	L	E	H	D	P	H	G	A	L	A	R	A	I	A	R	L	E	G	L	S	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	G	G	G	G							T	S						T	T			S														T	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	G	T	T	P	H	X	R	L	S	A	A	F	S	D	G	Q	T	L	Y	A	A	R	Y	S	S	D	H	I	A	P	S	V	Y	Y	R	Y	S	H	A	R	Q	G	W	A	V	V	S	E	P	L	E	T	D	E	G	D	W	T	E	L	R	P	G	R	X	L	T	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S		S	S	S										S	S									S	S	S											T	T	T	T						S	S					S	S								T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	A	E	G	A	A	E	R	D	F	A	P	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T