PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2zrvC_

Fold library id	PDB Header	Molecule	Title
c2zrvC_	PDB header: isomerase	Chain: C: PDB Molecule: isopentenyl-diphosphate delta-isomerase;	PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn.

Links to external resources
Added to library: Tue Mar 16 13:05:59 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R K V E H V E I A A F E N V D G L S S S T F L N D V I L V H Q G F P G I S F S E I N T K T K F F R K E I S V P V M V T G M T G G R N E L G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B S T T
S G G G
S S
S S
G G G
B
T T S S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I N K I I A E V A E K F G I P M G V G S Q R V A I E K A E A R E S F A I V R K V A P T I P I I A N L G M P Q L V K G Y G L K E F Q D A I Q M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G S
S S S
G G G G T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I E A D A I A V H L N P A Q E V F Q P E G E P E Y Q I Y A L E K L R D I S K E L S V P I I V K E S G N G I S M E T A K L L Y S Y G I K N F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S S
T
S S
S S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T S G Q G G T N W I A I E M I R D I R R G N W K A E S A K N F L D W G V P T A A S I M E V R Y S V P D S F L V G S G G I R S G L D A A K A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T S B
T T
T T T T
S
B S T T
S S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A L G A D I A G M A L P V L K S A I E G K E S L E Q F F R K I I F E L K A A M M L T G S K D V D A L K K T S I V I L G K L K E W A E Y R G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T
B T T S
T T

. . . . . . . . . 360 .

Sequence N L S I Y E K V R K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	K	V	E	H	V	E	I	A	A	F	E	N	V	D	G	L	S	S	S	T	F	L	N	D	V	I	L	V	H	Q	G	F	P	G	I	S	F	S	E	I	N	T	K	T	K	F	F	R	K	E	I	S	V	P	V	M	V	T	G	M	T	G	G	R	N	E	L	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S		B	S	T	T				S	G	G	G							S	S		S	S		G	G	G		B						T	T				S	S	S									S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	N	K	I	I	A	E	V	A	E	K	F	G	I	P	M	G	V	G	S	Q	R	V	A	I	E	K	A	E	A	R	E	S	F	A	I	V	R	K	V	A	P	T	I	P	I	I	A	N	L	G	M	P	Q	L	V	K	G	Y	G	L	K	E	F	Q	D	A	I	Q	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T															G	G	G	S											S	S	S								G	G	G	G	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	E	A	D	A	I	A	V	H	L	N	P	A	Q	E	V	F	Q	P	E	G	E	P	E	Y	Q	I	Y	A	L	E	K	L	R	D	I	S	K	E	L	S	V	P	I	I	V	K	E	S	G	N	G	I	S	M	E	T	A	K	L	L	Y	S	Y	G	I	K	N	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		S														S	S	S							T														S	S							S	S	S													T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	S	G	Q	G	G	T	N	W	I	A	I	E	M	I	R	D	I	R	R	G	N	W	K	A	E	S	A	K	N	F	L	D	W	G	V	P	T	A	A	S	I	M	E	V	R	Y	S	V	P	D	S	F	L	V	G	S	G	G	I	R	S	G	L	D	A	A	K	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B	T	S	B													T	T		T								T	T	T		S		B												S	T	T							S	S			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	L	G	A	D	I	A	G	M	A	L	P	V	L	K	S	A	I	E	G	K	E	S	L	E	Q	F	F	R	K	I	I	F	E	L	K	A	A	M	M	L	T	G	S	K	D	V	D	A	L	K	K	T	S	I	V	I	L	G	K	L	K	E	W	A	E	Y	R	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T		S																																					T	T			B					T	T	S															T	T
	.	.	.	.	.	.	.	.	.	360	.
Sequence	N	L	S	I	Y	E	K	V	R	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)