Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	T	F	S	V	S	R	L	A	L	A	L	A	F	G	V	T	L	T	A	C	S	S	T	P	P	D	Q	R	P	S	D	Q	T	A	P	G	T	S	S	R	P	I	L	S	A	K	E	A	Q	N	F	D	A	Q	H	Y	F	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?															?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?				?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	L	T	P	G	A	A	A	W	N	P	S	P	I	T	L	P	A	Q	P	D	F	V	V	G	P	A	G	T	Q	G	V	T	H	T	T	I	Q	A	A	V	D	A	A	I	I	K	R	T	N	K	R	Q	Y	I	A	V	M	P	G
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	Y	Q	G	T	V	Y	V	P	A	A	P	G	G	I	T	L	Y	G	T	G	E	K	P	I	D	V	K	I	G	L	S	L	D	G	G	M	S	P	A	D	W	R	H	D	V	N	P	R	G	K	Y	M	P	G	K	P	A	W	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	Y	D	S	C	Q	S	K	R	S	D	S	I	G	V	L	C	S	A	V	F	W	S	Q	N	N	G	L	Q	L	Q	N	L	T	I	E	N	T	L	G	D	S	V	D	A	G	N	H	P	A	V	A	L	R	T	D	G	D	Q	V
Secondary structure
SS confidence
Disorder								?	?																																?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	I	N	N	V	N	I	L	G	R	Q	N	T	F	F	V	T	N	S	G	V	Q	N	R	L	E	T	N	R	Q	P	R	T	L	V	T	N	S	Y	I	E	G	D	V	D	I	V	S	G	R	G	A	V	V	F	D	N	T	E	F
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		R	V	V	N	S	R	T	Q	Q	E	A	Y	V	F	A	P	A	T	L	S	N	I	Y	Y	G	F	L	A	V	N	S	R	F	N	A	F	G	D	G	V	A	Q	L	G	R	S	L	D	V	D	A	N	T	N	G	Q	V	V	I	R
Secondary structure
SS confidence
Disorder					?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	S	A	I	N	E	G	F	N	T	A	K	P	W	A	D	A	V	I	S	N	R	P	F	A	G	N	T	G	S	V	D	D	N	D	E	I	Q	R	N	L	N	D	T	N	Y	N	R	M	W	E	Y	N	N	R	G	V	G	S	K
Secondary structure
SS confidence
Disorder																				?	?	?										?		?	?	?	?	?	?		?	?			?															?	?
Disorder confidence
		.	.	.	.	.	.	.
Sequence		V	V	A	E	A	K	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3grh chain A Region: 29 - 420 Aligned: 392 Modelled: 392 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: A: PDB Molecule:acyl-coa thioester hydrolase ybgc; PDBTitle: crystal structure of escherichia coli ybhc Phyre2 PDB 1gq8 chain A Region: 75 - 426 Aligned: 271 Modelled: 272 Confidence: 100.0% Identity: 30% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Pectin methylesterase Phyre2 PDB 1xg2 chain A Region: 78 - 426 Aligned: 268 Modelled: 278 Confidence: 100.0% Identity: 29% PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:pectinesterase 1; PDBTitle: crystal structure of the complex between pectin2 methylesterase and its inhibitor protein Phyre2 PDB 1qjv chain A Region: 78 - 427 Aligned: 288 Modelled: 295 Confidence: 100.0% Identity: 26% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Pectin methylesterase Phyre2 PDB 1ofl chain A Region: 92 - 250 Aligned: 106 Modelled: 113 Confidence: 99.0% Identity: 13% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Chondroitinase B Phyre2 PDB 1dbg chain A Region: 83 - 284 Aligned: 141 Modelled: 156 Confidence: 98.9% Identity: 13% PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b Phyre2 PDB 1ru4 chain A Region: 76 - 301 Aligned: 194 Modelled: 201 Confidence: 98.9% Identity: 16% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Pectate transeliminase Phyre2 PDB 1bhe chain A Region: 70 - 367 Aligned: 284 Modelled: 298 Confidence: 98.7% Identity: 11% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 3eqn chain B Region: 18 - 367 Aligned: 302 Modelled: 321 Confidence: 98.7% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:glucan 1,3-beta-glucosidase; PDBTitle: crystal structure of beta-1,3-glucanase from phanerochaete2 chrysosporium (lam55a) Phyre2 PDB 1czf chain A Region: 87 - 367 Aligned: 242 Modelled: 263 Confidence: 98.5% Identity: 14% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 1czf chain B Region: 87 - 367 Aligned: 242 Modelled: 267 Confidence: 98.5% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:polygalacturonase ii; PDBTitle: endo-polygalacturonase ii from aspergillus niger Phyre2 PDB 2pyh chain B Region: 86 - 343 Aligned: 233 Modelled: 258 Confidence: 98.4% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: azotobacter vinelandii mannuronan c-5 epimerase alge4 a-module2 complexed with mannuronan trisaccharide Phyre2 PDB 2iq7 chain D Region: 97 - 367 Aligned: 234 Modelled: 254 Confidence: 98.2% Identity: 15% PDB header:hydrolase Chain: D: PDB Molecule:endopolygalacturonase; PDBTitle: crystal structure of the polygalacturonase from colletotrichum lupini2 and its implications for the interaction with polygalacturonase-3 inhibiting proteins Phyre2 PDB 1nhc chain A Region: 97 - 369 Aligned: 235 Modelled: 259 Confidence: 98.0% Identity: 13% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 2uve chain A Region: 86 - 343 Aligned: 241 Modelled: 251 Confidence: 98.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:exopolygalacturonase; PDBTitle: structure of yersinia enterocolitica family 282 exopolygalacturonase Phyre2 PDB 2inu chain C Region: 85 - 332 Aligned: 214 Modelled: 228 Confidence: 98.0% Identity: 14% PDB header:lyase Chain: C: PDB Molecule:insulin fructotransferase; PDBTitle: crystal structure of insulin fructotransferase in the absence of2 substrate Phyre2 PDB 1hg8 chain A Region: 93 - 367 Aligned: 250 Modelled: 261 Confidence: 98.0% Identity: 15% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 1ia5 chain A Region: 83 - 370 Aligned: 249 Modelled: 268 Confidence: 97.9% Identity: 12% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 3jur chain A Region: 97 - 366 Aligned: 256 Modelled: 266 Confidence: 97.7% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:exo-poly-alpha-d-galacturonosidase; PDBTitle: the crystal structure of a hyperthermoactive exopolygalacturonase from2 thermotoga maritima Phyre2 PDB 1rmg chain A Region: 87 - 370 Aligned: 238 Modelled: 258 Confidence: 97.2% Identity: 10% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 1 c3grhA_ 2 d1gq8a_ 3 c1xg2A_ 4 d1qjva_ 5 d1ofla_ 6 c1dbgA_ 7 d1ru4a_ 8 d1bhea_ 9 c3eqnB_ 10 d1czfa_ 11 c1czfB_ 12 c2pyhB_ 13 c2iq7D_ 14 d1nhca_ 15 c2uveA_ 16 c2inuC_ 17 d1hg8a_ 18 d1ia5a_ 19 c3jurA_ 20 d1rmga_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3grhA_ 100.0 100 PDB header:hydrolase Chain: A: PDB Molecule:acyl-coa thioester hydrolase ybgc; PDBTitle: crystal structure of escherichia coli ybhc 2 d1gq8a_ 100.0 30 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectin methylesterase 3 c1xg2A_ 100.0 29 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:pectinesterase 1; PDBTitle: crystal structure of the complex between pectin2 methylesterase and its inhibitor protein 4 d1qjva_ 100.0 26 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectin methylesterase 5 d1ofla_ 99.0 13 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Chondroitinase B 6 c1dbgA_ 98.9 13 PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b 7 d1ru4a_ 98.9 16 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate transeliminase 8 d1bhea_ 98.7 11 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 9 c3eqnB_ 98.7 15 PDB header:hydrolase Chain: B: PDB Molecule:glucan 1,3-beta-glucosidase; PDBTitle: crystal structure of beta-1,3-glucanase from phanerochaete2 chrysosporium (lam55a) 10 d1czfa_ 98.5 14 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 11 c1czfB_ 98.5 13 PDB header:hydrolase Chain: B: PDB Molecule:polygalacturonase ii; PDBTitle: endo-polygalacturonase ii from aspergillus niger 12 c2pyhB_ 98.4 13 PDB header:isomerase Chain: B: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: azotobacter vinelandii mannuronan c-5 epimerase alge4 a-module2 complexed with mannuronan trisaccharide 13 c2iq7D_ 98.2 15 PDB header:hydrolase Chain: D: PDB Molecule:endopolygalacturonase; PDBTitle: crystal structure of the polygalacturonase from colletotrichum lupini2 and its implications for the interaction with polygalacturonase-3 inhibiting proteins 14 d1nhca_ 98.0 13 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 15 c2uveA_ 98.0 16 PDB header:hydrolase Chain: A: PDB Molecule:exopolygalacturonase; PDBTitle: structure of yersinia enterocolitica family 282 exopolygalacturonase 16 c2inuC_ 98.0 14 PDB header:lyase Chain: C: PDB Molecule:insulin fructotransferase; PDBTitle: crystal structure of insulin fructotransferase in the absence of2 substrate 17 d1hg8a_ 98.0 15 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 18 d1ia5a_ 97.9 12 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 19 c3jurA_ 97.7 14 PDB header:hydrolase Chain: A: PDB Molecule:exo-poly-alpha-d-galacturonosidase; PDBTitle: the crystal structure of a hyperthermoactive exopolygalacturonase from2 thermotoga maritima 20 d1rmga_ 97.2 10 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 21 c3gqnA_ not modelled 96.9 15 PDB header:viral protein Chain: A: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the pre-mature bacteriophage phi29 gene product2 12 22 c3gq8A_ not modelled 96.5 12 PDB header:viral protein Chain: A: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the bacteriophage phi29 gene product2 12 n-terminal fragment in complex with 2-(n-3 cyclohexylamino)ethane sulfonic acid (ches) 23 c2qy1B_ not modelled 96.4 21 PDB header:lyase Chain: B: PDB Molecule:pectate lyase ii; PDBTitle: pectate lyase a31g/r236f from xanthomonas campestris 24 d1idka_ not modelled 96.0 28 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectin lyase 25 d1pcla_ not modelled 95.6 21 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 26 d1qcxa_ not modelled 95.2 25 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectin lyase 27 d1bn8a_ not modelled 95.0 18 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 28 d1k5ca_ not modelled 94.9 12 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 29 d1pe9a_ not modelled 93.9 27 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 30 d1ogmx2 not modelled 93.4 11 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Dextranase, catalytic domain 31 d1o88a_ not modelled 93.4 21 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 32 c2vjjA_ not modelled 92.8 19 PDB header:viral protein Chain: A: PDB Molecule:tailspike protein; PDBTitle: tailspike protein of e.coli bacteriophage hk620 in complex2 with hexasaccharide 33 c1vblA_ not modelled 92.4 23 PDB header:lyase Chain: A: PDB Molecule:pectate lyase 47; PDBTitle: structure of the thermostable pectate lyase pl 47 34 c2z8gB_ not modelled 85.1 15 PDB header:hydrolase Chain: B: PDB Molecule:isopullulanase; PDBTitle: aspergillus niger atcc9642 isopullulanase complexed with isopanose 35 d1pxza_ not modelled 85.0 19 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 36 c1ogoX_ not modelled 41.2 13 PDB header:hydrolase Chain: X: PDB Molecule:dextranase; PDBTitle: dex49a from penicillium minioluteum complex with isomaltose 37 d1j83a_ not modelled 18.8 23 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 17 carbohydrate binding module, CBM17 38 c3cegA_ not modelled 18.1 26 PDB header:ligase Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 6; PDBTitle: crystal structure of the ubc domain of baculoviral iap2 repeat-containing protein 6 39 d1acoa1 not modelled 16.2 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:LeuD-like 40 c2l02B_ not modelled 12.3 45 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 41 c2p4gA_ not modelled 10.9 7 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a pyrimidine reductase-like protein (dip1392)2 from corynebacterium diphtheriae nctc at 2.30 a resolution 42 c3owvA_ not modelled 10.0 7 PDB header:hydrolase Chain: A: PDB Molecule:dna-entry nuclease; PDBTitle: structural insights into catalytic and substrate binding mechanisms of2 the strategic enda nuclease from streptococcus pneumoniae 43 c2vbeA_ not modelled 9.9 29 PDB header:viral protein Chain: A: PDB Molecule:tailspike-protein; PDBTitle: tailspike protein of bacteriophage sf6 44 d1dmla1 not modelled 9.8 20 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 45 c2xz8A_ not modelled 9.1 33 PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfw ectodomain of the2 peptidoglycan recognition protein lf 46 c1dmlG_ not modelled 8.9 20 PDB header:dna binding protein/transferase Chain: G: PDB Molecule:dna polymerase processivity factor; PDBTitle: crystal structure of herpes simplex ul42 bound to the c-2 terminus of hsv pol 47 c2rfyB_ not modelled 8.9 36 PDB header:hydrolase Chain: B: PDB Molecule:cellulose 1,4-beta-cellobiosidase; PDBTitle: crystal structure of cellobiohydrolase from melanocarpus2 albomyces complexed with cellobiose 48 d2nn6h3 not modelled 8.4 17 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 49 c2qyvB_ not modelled 7.8 19 PDB header:hydrolase Chain: B: PDB Molecule:xaa-his dipeptidase; PDBTitle: crystal structure of putative xaa-his dipeptidase (yp_718209.1) from2 haemophilus somnus 129pt at 2.11 a resolution 50 d1autl2 not modelled 7.7 40 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module 51 d1ckva_ not modelled 7.6 50 Fold:Monooxygenase (hydroxylase) regulatory protein Superfamily:Monooxygenase (hydroxylase) regulatory protein Family:Monooxygenase (hydroxylase) regulatory protein 52 c3b4qA_ not modelled 7.5 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a conserved protein domain (unknown2 function) from corynebacterium diphtheriae 53 c3ep1B_ not modelled 7.1 38 PDB header:immune system Chain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein PDBTitle: structure of the pgrp-hd from alvinella pompejana 54 d2cu8a1 not modelled 7.0 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 55 c3gw6F_ not modelled 6.6 21 PDB header:chaperone Chain: F: PDB Molecule:endo-n-acetylneuraminidase; PDBTitle: intramolecular chaperone 56 d1hqia_ not modelled 6.0 67 Fold:Monooxygenase (hydroxylase) regulatory protein Superfamily:Monooxygenase (hydroxylase) regulatory protein Family:Monooxygenase (hydroxylase) regulatory protein 57 d1ex4a1 not modelled 5.8 37 Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase 58 d1el6a_ not modelled 5.8 25 Fold:Baseplate structural protein gp11 Superfamily:Baseplate structural protein gp11 Family:Baseplate structural protein gp11 59 d2moba_ not modelled 5.6 40 Fold:Monooxygenase (hydroxylase) regulatory protein Superfamily:Monooxygenase (hydroxylase) regulatory protein Family:Monooxygenase (hydroxylase) regulatory protein 60 c2mobA_ not modelled 5.6 40 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (methane monooxygenase regulatory PDBTitle: methane monooxygenase component b 61 c3rlcA_ not modelled 5.2 21 PDB header:structural protein Chain: A: PDB Molecule:a1 protein; PDBTitle: crystal structure of the read-through domain from bacteriophage qbeta2 a1 protein, hexagonal crystal form 62 d1k4ia_ not modelled 5.1 10 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 63 d1xpaa2 not modelled 5.1 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain 64 c1s2jA_ not modelled 5.0 25 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan recognition protein sa cg11709-pa; PDBTitle: crystal structure of the drosophila pattern-recognition2 receptor pgrp-sa 65 d1jb0d_ not modelled 5.0 14 Fold:Photosystem I subunit PsaD Superfamily:Photosystem I subunit PsaD Family:Photosystem I subunit PsaD

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0