Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	I	I	E	A	N	V	A	T	P	D	A	R	V	A	I	T	I	A	R	F	N	N	F	I	N	D	S	L	L	E	G	A	I	D	A	L	K	R	I	G	Q	V	K	D	E	N	I	T	V	V	W	V	P	G	A	Y	E	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	L	A	A	G	A	L	A	K	T	G	K	Y	D	A	V	I	A	L	G	T	V	I	R	G	G	T	A	H	F	E	Y	V	A	G	G	A	S	N	G	L	A	H	V	A	Q	D	S	E	I	P	V	A	F	G	V	L	T	T	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Sequence		S	I	E	Q	A	I	E	R	A	G	T	K	A	G	N	K	G	A	E	A	A	L	T	A	L	E	M	I	N	V	L	K	A	I	K	A
Secondary structure
SS confidence
Disorder									?	?	?	?	?		?																				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mk3 chain L Region: 1 - 154 Aligned: 154 Modelled: 154 Confidence: 100.0% Identity: 91% PDB header:transferase Chain: L: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase; PDBTitle: crystal structure of lumazine synthase from salmonella typhimurium lt2 Phyre2 PDB 1rvv chain 1 Region: 1 - 155 Aligned: 154 Modelled: 155 Confidence: 100.0% Identity: 53% Fold: Lumazine synthase Superfamily: Lumazine synthase Family: Lumazine synthase Phyre2 PDB 1nqu chain A Region: 1 - 155 Aligned: 154 Modelled: 155 Confidence: 100.0% Identity: 50% Fold: Lumazine synthase Superfamily: Lumazine synthase Family: Lumazine synthase Phyre2 PDB 1c2y chain A Region: 1 - 153 Aligned: 151 Modelled: 153 Confidence: 100.0% Identity: 50% Fold: Lumazine synthase Superfamily: Lumazine synthase Family: Lumazine synthase Phyre2 PDB 1c41 chain A Region: 6 - 156 Aligned: 150 Modelled: 151 Confidence: 100.0% Identity: 43% Fold: Lumazine synthase Superfamily: Lumazine synthase Family: Lumazine synthase Phyre2 PDB 1kz1 chain A Region: 6 - 151 Aligned: 146 Modelled: 146 Confidence: 100.0% Identity: 38% Fold: Lumazine synthase Superfamily: Lumazine synthase Family: Lumazine synthase Phyre2 PDB 1ejb chain A Region: 5 - 153 Aligned: 148 Modelled: 149 Confidence: 100.0% Identity: 35% Fold: Lumazine synthase Superfamily: Lumazine synthase Family: Lumazine synthase Phyre2 PDB 1di0 chain A Region: 11 - 156 Aligned: 145 Modelled: 146 Confidence: 100.0% Identity: 32% Fold: Lumazine synthase Superfamily: Lumazine synthase Family: Lumazine synthase Phyre2 PDB 2f59 chain B Region: 12 - 156 Aligned: 141 Modelled: 145 Confidence: 100.0% Identity: 40% PDB header:transferase Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione Phyre2 PDB 2obx chain H Region: 11 - 154 Aligned: 143 Modelled: 144 Confidence: 100.0% Identity: 32% PDB header:transferase Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione Phyre2 PDB 1w19 chain E Region: 10 - 156 Aligned: 142 Modelled: 147 Confidence: 100.0% Identity: 45% PDB header:transferase Chain: E: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase; PDBTitle: lumazine synthase from mycobacterium tuberculosis bound to2 3-(1,3,7-trihydro-9-d-ribityl-2,6,8-purinetrione-7-yl)3 propane 1-phosphate Phyre2 PDB 2b99 chain A Region: 34 - 149 Aligned: 111 Modelled: 116 Confidence: 97.7% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor Phyre2 PDB 3lft chain A Region: 11 - 80 Aligned: 68 Modelled: 70 Confidence: 94.9% Identity: 16% PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a Phyre2 PDB 2qh8 chain A Region: 11 - 80 Aligned: 69 Modelled: 70 Confidence: 92.2% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 Phyre2 PDB 3h5o chain B Region: 14 - 80 Aligned: 63 Modelled: 67 Confidence: 90.9% Identity: 17% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum Phyre2 PDB 3kke chain A Region: 15 - 81 Aligned: 63 Modelled: 67 Confidence: 90.7% Identity: 13% PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis Phyre2 PDB 1gud chain A Region: 12 - 80 Aligned: 65 Modelled: 69 Confidence: 90.6% Identity: 14% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 1gca chain A Region: 11 - 148 Aligned: 123 Modelled: 126 Confidence: 89.3% Identity: 13% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 3ksm chain A Region: 13 - 78 Aligned: 62 Modelled: 62 Confidence: 88.1% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis Phyre2 PDB 3ma0 chain A Region: 11 - 78 Aligned: 64 Modelled: 68 Confidence: 87.8% Identity: 9% PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli Phyre2 1 c3mk3L_ 2 d1rvv1_ 3 d1nqua_ 4 d1c2ya_ 5 d1c41a_ 6 d1kz1a_ 7 d1ejba_ 8 d1di0a_ 9 c2f59B_ 10 c2obxH_ 11 c1w19E_ 12 c2b99A_ 13 c3lftA_ 14 c2qh8A_ 15 c3h5oB_ 16 c3kkeA_ 17 d1guda_ 18 d1gcaa_ 19 c3ksmA_ 20 c3ma0A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mk3L_ 100.0 91 PDB header:transferase Chain: L: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase; PDBTitle: crystal structure of lumazine synthase from salmonella typhimurium lt2 2 d1rvv1_ 100.0 53 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 3 d1nqua_ 100.0 50 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 4 d1c2ya_ 100.0 50 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 5 d1c41a_ 100.0 43 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 6 d1kz1a_ 100.0 38 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 7 d1ejba_ 100.0 35 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 8 d1di0a_ 100.0 32 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 9 c2f59B_ 100.0 40 PDB header:transferase Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 10 c2obxH_ 100.0 32 PDB header:transferase Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 11 c1w19E_ 100.0 45 PDB header:transferase Chain: E: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase; PDBTitle: lumazine synthase from mycobacterium tuberculosis bound to2 3-(1,3,7-trihydro-9-d-ribityl-2,6,8-purinetrione-7-yl)3 propane 1-phosphate 12 c2b99A_ 97.7 25 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor 13 c3lftA_ 94.9 16 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a 14 c2qh8A_ 92.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 15 c3h5oB_ 90.9 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 16 c3kkeA_ 90.7 13 PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis 17 d1guda_ 90.6 14 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 18 d1gcaa_ 89.3 13 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 19 c3ksmA_ 88.1 13 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 20 c3ma0A_ 87.8 9 PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli 21 c3bilA_ not modelled 87.6 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum 22 c3l6uA_ not modelled 86.6 14 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum 23 c3o74A_ not modelled 86.1 8 PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida 24 c2fn9A_ not modelled 86.0 24 PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form 25 c3hcwB_ not modelled 85.8 13 PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus 26 c3o1hB_ not modelled 84.8 17 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 27 d8abpa_ not modelled 83.8 16 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 28 c3brqA_ not modelled 82.8 13 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 29 c3e3mA_ not modelled 82.6 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 30 c3mizB_ not modelled 82.4 14 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli 31 c3c3kA_ not modelled 82.2 12 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes 32 c3ctpB_ not modelled 81.9 10 PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose 33 c2qu7B_ not modelled 81.6 11 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus 34 d2dria_ not modelled 80.9 19 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 35 c2vk2A_ not modelled 80.7 11 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 36 c3d8uA_ not modelled 79.3 13 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 37 d2fvya1 not modelled 76.6 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 38 d1byka_ not modelled 76.4 18 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 39 d1dbqa_ not modelled 75.6 8 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 40 d1y5ea1 not modelled 74.8 19 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 41 c3gv0A_ not modelled 74.1 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens 42 c2o20H_ not modelled 71.7 11 PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis 43 d1tjya_ not modelled 71.5 24 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 44 c2rjoA_ not modelled 71.0 14 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 45 c3egcF_ not modelled 70.6 11 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis 46 c3k9cA_ not modelled 70.1 20 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species. 47 c3l49D_ not modelled 69.7 13 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 48 d2nzug1 not modelled 68.6 18 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 49 c3clkB_ not modelled 67.8 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum 50 c3jy6B_ not modelled 67.8 15 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis 51 c2h0aA_ not modelled 67.4 19 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus 52 c2iksA_ not modelled 66.5 9 PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 53 d1uuya_ not modelled 65.8 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 54 c3e61A_ not modelled 65.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus 55 c3bblA_ not modelled 64.9 11 PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans 56 c2fqxA_ not modelled 64.5 18 PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine 57 c3rotA_ not modelled 63.2 17 PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila 58 d2f7wa1 not modelled 62.5 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 59 c3cs3A_ not modelled 61.4 18 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 60 c2ioyB_ not modelled 61.3 17 PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein 61 d1tlfa_ not modelled 59.9 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 62 d1jyea_ not modelled 59.1 10 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 63 c1jyeA_ not modelled 59.1 10 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 64 c3huuC_ not modelled 58.7 14 PDB header:transcription regulator Chain: C: PDB Molecule:transcription regulator like protein; PDBTitle: crystal structure of transcription regulator like protein from2 staphylococcus haemolyticus 65 c2x7xA_ not modelled 58.1 17 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: fructose binding periplasmic domain of hybrid two component2 system bt1754 66 c3qk7C_ not modelled 56.9 18 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 67 d1jlja_ not modelled 55.2 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 68 c3lq1A_ not modelled 53.1 28 PDB header:transferase Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- PDBTitle: crystal structure of 2-succinyl-6-hydroxy-2,4-cyclohexadiene2 1-carboxylic acid synthase/2-oxoglutarate decarboxylase3 from listeria monocytogenes str. 4b f2365 69 c3k4hA_ not modelled 48.6 9 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 70 c2is8A_ not modelled 48.2 18 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 71 d2csua3 not modelled 48.1 20 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 72 c2w7tA_ not modelled 46.4 18 PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin 73 c2csuB_ not modelled 46.3 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 74 c3g1wB_ not modelled 45.9 13 PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans 75 d1di6a_ not modelled 45.6 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 76 c2nu9E_ not modelled 45.1 21 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 77 c2jlaD_ not modelled 43.2 33 PDB header:transferase Chain: D: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl-2 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - semet3 protein 78 d2nu7b1 not modelled 42.8 21 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 79 c3gybB_ not modelled 42.4 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum 80 d2a5la1 not modelled 42.3 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 81 c2qvcC_ not modelled 42.2 12 PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima 82 c2dzaA_ not modelled 42.0 41 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of dihydropteroate synthase from thermus2 thermophilus hb8 in complex with 4-aminobenzoate 83 c3c5yD_ not modelled 41.6 24 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 84 d1mkza_ not modelled 41.5 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 85 c3dbiA_ not modelled 41.3 13 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate 86 c2rgyA_ not modelled 38.6 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 87 c3g85A_ not modelled 38.2 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum 88 d2nqra3 not modelled 36.6 24 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 89 d1u11a_ not modelled 36.3 16 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 90 d1o2da_ not modelled 36.1 15 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 91 d1b43a2 not modelled 35.2 28 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 92 d1rxwa2 not modelled 34.4 22 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 93 d2pjua1 not modelled 34.0 19 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 94 c2fw9A_ not modelled 32.9 16 PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8 95 c3jvdA_ not modelled 32.8 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum 96 d7reqa2 not modelled 31.8 16 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 97 d4pgaa_ not modelled 31.7 32 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 98 c3lp6D_ not modelled 31.4 21 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution 99 c3kklA_ not modelled 31.2 20 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 100 d1vlja_ not modelled 31.1 28 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 101 c3brsA_ not modelled 30.8 15 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans 102 c3orsD_ not modelled 30.1 15 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 103 c2y5sA_ not modelled 29.8 33 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 104 c3s99A_ not modelled 29.6 8 PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak 105 c3oryA_ not modelled 28.8 27 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 106 d2jgra1 not modelled 28.3 25 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 107 c2ywxA_ not modelled 27.9 29 PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii 108 c1b43A_ not modelled 27.9 31 PDB header:transferase Chain: A: PDB Molecule:protein (fen-1); PDBTitle: fen-1 from p. furiosus 109 c2hmcA_ not modelled 27.6 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens 110 d1ofux_ not modelled 27.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Bacterial cell division inhibitor SulA 111 c2x7jA_ not modelled 26.0 25 PDB header:transferase Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: structure of the menaquinone biosynthesis protein mend from2 bacillus subtilis 112 d1jx6a_ not modelled 25.3 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 113 c2r94B_ not modelled 25.2 18 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase; PDBTitle: crystal structure of kd(p)ga from t.tenax 114 c1dl5A_ not modelled 24.9 27 PDB header:transferase Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase; PDBTitle: protein-l-isoaspartate o-methyltransferase 115 c2zkiH_ not modelled 24.0 8 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 116 c1oftC_ not modelled 23.9 17 PDB header:bacterial cell division inhibitor Chain: C: PDB Molecule:hypothetical protein pa3008; PDBTitle: crystal structure of sula from pseudomonas aeruginosa 117 c3hs3A_ not modelled 23.5 14 PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus 118 d1o7ja_ not modelled 23.4 32 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 119 d1a77a2 not modelled 22.6 29 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 120 c3okfA_ not modelled 22.5 24 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0