Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76407
DateThu Jan 5 12:22:50 GMT 2012
Unique Job ID4462547fd55946a9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2bona1
Top template information
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
Confidence and coverage
Confidence:100.0% Coverage: 95%
285 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVAT
Secondary structure 
























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Disorder  ????












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   .........70.........80.........90.........100.........110.........120
Sequence  VIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGD
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   .........130.........140.........150.........160.........170.........180
Sequence  AIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRC
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   .........190.........200.........210.........220.........230.........240
Sequence  EIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLK
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   .........250.........260.........270.........280.........290.........
Sequence  SDEDNPNIIEGASSWFDIQAPHDITFNLDGEPLSGQNFHIEILPAALRCRLPPDCPLLR
Secondary structure 




























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Disorder  ?

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??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2bon chain A domain 1

3D model

Region: 5 - 299
Aligned: 285
Modelled: 295
Confidence: 100.0%
Identity: 100%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: Diacylglycerol kinase-like

Phyre2

PDB 2p1r chain A domain 1

3D model

Region: 1 - 299
Aligned: 290
Modelled: 298
Confidence: 100.0%
Identity: 82%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: Diacylglycerol kinase-like

Phyre2

PDB 2bon chain B

3D model

Region: 5 - 299
Aligned: 263
Modelled: 277
Confidence: 100.0%
Identity: 100%
PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)

Phyre2

PDB 3s40 chain C

3D model

Region: 2 - 294
Aligned: 278
Modelled: 293
Confidence: 100.0%
Identity: 28%
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne

Phyre2

PDB 2qv7 chain A

3D model

Region: 2 - 294
Aligned: 277
Modelled: 291
Confidence: 100.0%
Identity: 28%
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg

Phyre2

PDB 2qv7 chain A domain 1

3D model

Region: 3 - 294
Aligned: 276
Modelled: 291
Confidence: 100.0%
Identity: 28%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: Diacylglycerol kinase-like

Phyre2

PDB 2jgr chain A domain 1

3D model

Region: 4 - 228
Aligned: 205
Modelled: 205
Confidence: 100.0%
Identity: 96%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: Diacylglycerol kinase-like

Phyre2

PDB 1u0t chain A

3D model

Region: 6 - 296
Aligned: 228
Modelled: 243
Confidence: 99.6%
Identity: 17%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: NAD kinase-like

Phyre2

PDB 1yt5 chain A

3D model

Region: 6 - 294
Aligned: 228
Modelled: 259
Confidence: 99.5%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of nad kinase from thermotoga maritima

Phyre2

PDB 2an1 chain D

3D model

Region: 3 - 296
Aligned: 237
Modelled: 260
Confidence: 99.2%
Identity: 17%
PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2

Phyre2

PDB 3pfn chain B

3D model

Region: 2 - 294
Aligned: 247
Modelled: 261
Confidence: 98.7%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase

Phyre2

PDB 1z0z chain C

3D model

Region: 6 - 294
Aligned: 228
Modelled: 249
Confidence: 98.7%
Identity: 13%
PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad

Phyre2

PDB 1z0s chain A domain 1

3D model

Region: 6 - 294
Aligned: 228
Modelled: 246
Confidence: 98.6%
Identity: 13%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: NAD kinase-like

Phyre2

PDB 2i2a chain A

3D model

Region: 6 - 296
Aligned: 235
Modelled: 235
Confidence: 98.6%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1;
PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes

Phyre2

PDB 3afo chain B

3D model

Region: 2 - 290
Aligned: 258
Modelled: 273
Confidence: 98.5%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:nadh kinase pos5;
PDBTitle: crystal structure of yeast nadh kinase complexed with nadh

Phyre2

PDB 3bfj chain K

3D model

Region: 3 - 93
Aligned: 90
Modelled: 91
Confidence: 97.4%
Identity: 16%
PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase

Phyre2

PDB 3ox4 chain D

3D model

Region: 2 - 93
Aligned: 91
Modelled: 92
Confidence: 97.2%
Identity: 15%
PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor

Phyre2

PDB 1vlj chain A

3D model

Region: 3 - 93
Aligned: 90
Modelled: 91
Confidence: 97.0%
Identity: 19%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 3okf chain A

3D model

Region: 4 - 98
Aligned: 92
Modelled: 95
Confidence: 97.0%
Identity: 20%
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae

Phyre2

PDB 1rrm chain A

3D model

Region: 3 - 93
Aligned: 90
Modelled: 91
Confidence: 96.9%
Identity: 13%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2
1

d2bona1
2

d2p1ra1
3

c2bonB_
4

c3s40C_
5

c2qv7A_
6

d2qv7a1
7

d2jgra1
8

d1u0ta_
9

c1yt5A_
10

c2an1D_
11

c3pfnB_
12

c1z0zC_
13

d1z0sa1
14

c2i2aA_
15

c3afoB_
16

c3bfjK_
17

c3ox4D_
18

d1vlja_
19

c3okfA_
20

d1rrma_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2bona1



100.0 100 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
2d2p1ra1



100.0 82 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
3c2bonB_



100.0 100 PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)
4c3s40C_



100.0 28 PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
5c2qv7A_



100.0 28 PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg
6d2qv7a1



100.0 28 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
7d2jgra1



100.0 96 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
8d1u0ta_



99.6 17 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
9c1yt5A_



99.5 15 PDB header:transferase
Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of nad kinase from thermotoga maritima
10c2an1D_



99.2 17 PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
11c3pfnB_



98.7 19 PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase
12c1z0zC_



98.7 13 PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
13d1z0sa1



98.6 13 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
14c2i2aA_



98.6 15 PDB header:transferase
Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1;
PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes
15c3afoB_



98.5 14 PDB header:transferase
Chain: B: PDB Molecule:nadh kinase pos5;
PDBTitle: crystal structure of yeast nadh kinase complexed with nadh
16c3bfjK_



97.4 16 PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase
17c3ox4D_



97.2 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor
18d1vlja_



97.0 19 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
19c3okfA_



97.0 20 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae
20d1rrma_



96.9 13 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
21d1jq5a_



not modelled 96.8 20 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
22c3ce9A_



not modelled 96.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution
23d1o2da_



not modelled 96.6 19 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
24c3lp6D_



not modelled 96.5 27 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
25c1ta9A_



not modelled 96.5 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe
26d1o4va_



not modelled 96.3 25 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
27d1u11a_



not modelled 96.2 23 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
28c2fw9A_



not modelled 96.2 23 PDB header:lyase
Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
29c2gruB_



not modelled 96.2 20 PDB header:lyase
Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase;
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+
30d1oj7a_



not modelled 96.1 22 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
31c3trhI_



not modelled 95.9 20 PDB header:lyase
Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase
PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
32c3orsD_



not modelled 95.5 20 PDB header:isomerase,biosynthetic protein
Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
33c3iv7B_



not modelled 95.5 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase iv;
PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution
34c3rf7A_



not modelled 95.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution
35c3clhA_



not modelled 95.3 20 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori
36d1kq3a_



not modelled 95.3 9 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
37d1xmpa_



not modelled 95.2 22 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
38c3hl0B_



not modelled 94.9 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:maleylacetate reductase;
PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens
39d1qcza_



not modelled 94.8 20 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
40c3rggD_



not modelled 94.4 10 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
41c3jzdA_



not modelled 94.3 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution
42d1sg6a_



not modelled 94.1 17 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
43c1i3oC_



not modelled 93.9 13 PDB header:apoptosis
Chain: C: PDB Molecule:caspase 3;
PDBTitle: crystal structure of the complex of xiap-bir2 and caspase 3
44c3sipC_



not modelled 93.7 19 PDB header:hydrolase/ligase/hydrolase
Chain: C: PDB Molecule:caspase;
PDBTitle: crystal structure of drice and diap1-bir1 complex
45c2wdpA_



not modelled 93.6 12 PDB header:hydrolase
Chain: A: PDB Molecule:caspase-6;
PDBTitle: crystal structure of ligand free human caspase-6
46c3uhjE_



not modelled 93.4 14 PDB header:oxidoreductase
Chain: E: PDB Molecule:probable glycerol dehydrogenase;
PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021
47c1i51A_



not modelled 93.4 16 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:caspase-7 subunit p20;
PDBTitle: crystal structure of caspase-7 complexed with xiap
48c1qduI_



not modelled 93.4 16 PDB header:hydrolase/hydrolase inhibitor
Chain: I: PDB Molecule:caspase-8 alpha-chain;
PDBTitle: crystal structure of the complex of caspase-8 with the tripeptide2 ketone inhibitor zevd-dcbmk
49c3p45I_



not modelled 93.3 12 PDB header:hydrolase
Chain: I: PDB Molecule:caspase-6;
PDBTitle: crystal structure of apo-caspase-6 at physiological ph
50c1xahA_



not modelled 93.3 16 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+
51c1pyoA_



not modelled 93.3 20 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:caspase-2;
PDBTitle: crystal structure of human caspase-2 in complex with acetyl-leu-asp-2 glu-ser-asp-cho
52c3h11A_



not modelled 92.9 8 PDB header:apoptosis
Chain: A: PDB Molecule:casp8 and fadd-like apoptosis regulator;
PDBTitle: zymogen caspase-8:c-flipl protease domain complex
53d1f1ja_



not modelled 92.7 16 Fold:Caspase-like
Superfamily:Caspase-like
Family:Caspase catalytic domain
54c3edqC_



not modelled 92.7 11 PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:caspase-3;
PDBTitle: crystal structure of caspase-3 with inhibitor ac-ldesd-cho
55c2ql5A_



not modelled 92.6 13 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:caspase-7;
PDBTitle: crystal structure of caspase-7 with inhibitor ac-dmqd-cho
56c2nn3D_



not modelled 92.6 13 PDB header:hydrolase
Chain: D: PDB Molecule:caspase-1;
PDBTitle: structure of pro-sf-caspase-1
57d1uz5a3



not modelled 92.4 19 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
58c2ywxA_



not modelled 92.3 21 PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii
59d1a9xb2



not modelled 92.2 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
60c2vpiA_



not modelled 92.2 19 PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
61c3sirD_



not modelled 91.8 13 PDB header:hydrolase
Chain: D: PDB Molecule:caspase;
PDBTitle: crystal structure of drice
62d1u9ca_



not modelled 91.5 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
63d1nw9b_



not modelled 91.4 16 Fold:Caspase-like
Superfamily:Caspase-like
Family:Caspase catalytic domain
64c2fqxA_



not modelled 91.3 8 PDB header:transport protein
Chain: A: PDB Molecule:membrane lipoprotein tmpc;
PDBTitle: pnra from treponema pallidum complexed with guanosine
65c2funB_



not modelled 91.2 15 PDB header:apoptosis/hydrolase
Chain: B: PDB Molecule:caspase-8;
PDBTitle: alternative p35-caspase-8 complex
66d2f48a1



not modelled 91.0 16 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
67c3zquA_



not modelled 90.9 15 PDB header:lyase
Chain: A: PDB Molecule:probable aromatic acid decarboxylase;
PDBTitle: structure of a probable aromatic acid decarboxylase
68c1keeH_



not modelled 90.8 24 PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
69c1kmcB_



not modelled 90.6 16 PDB header:apoptosis/hydrolase
Chain: B: PDB Molecule:caspase-7;
PDBTitle: crystal structure of the caspase-7 / xiap-bir2 complex
70c3opyE_



not modelled 90.6 12 PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
71c3d54D_



not modelled 90.6 19 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
72d2ftsa3



not modelled 90.5 17 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
73c3opyG_



not modelled 90.4 11 PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
74c1zxxA_



not modelled 90.0 27 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
75c3k2qA_



not modelled 89.3 20 PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
76d1qdlb_



not modelled 89.2 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
77d1pfka_



not modelled 89.1 25 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
78c2ejbA_



not modelled 89.0 12 PDB header:lyase
Chain: A: PDB Molecule:probable aromatic acid decarboxylase;
PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus
79d1m72a_



not modelled 89.0 15 Fold:Caspase-like
Superfamily:Caspase-like
Family:Caspase catalytic domain
80c2hbzA_



not modelled 88.9 16 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:caspase-1;
PDBTitle: crystal structure of human caspase-1 (arg286->ala, glu390->ala) in2 complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-3 propionylamino]-4-oxo-pentanoic acid (z-vad-fmk)
81c1nmqB_



not modelled 88.9 13 PDB header:apoptosis, hydrolase
Chain: B: PDB Molecule:caspase-3;
PDBTitle: extendend tethering: in situ assembly of inhibitors
82d1ptma_



not modelled 88.3 18 Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:PdxA-like
83d7reqa2



not modelled 88.0 17 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
84c2higA_



not modelled 87.9 17 PDB header:transferase
Chain: A: PDB Molecule:6-phospho-1-fructokinase;
PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei.
85d4pfka_



not modelled 87.9 21 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
86c1cp3B_



not modelled 87.8 10 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:apopain;
PDBTitle: crystal structure of the complex of apopain with the tetrapeptide2 inhibitor ace-dvad-fmc
87c3o8oC_



not modelled 87.2 11 PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
88d1pjqa1



not modelled 86.8 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Siroheme synthase N-terminal domain-like
89d2a5la1



not modelled 86.6 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
90c2q5cA_



not modelled 86.6 14 PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
91c3opyB_



not modelled 86.3 15 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
92c3opyH_



not modelled 86.3 15 PDB header:transferase
Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
93c3gjzB_



not modelled 86.0 19 PDB header:immune system
Chain: B: PDB Molecule:microcin immunity protein mccf;
PDBTitle: crystal structure of microcin immunity protein mccf from bacillus2 anthracis str. ames
94d1i1qb_



not modelled 85.8 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
95c3o8nA_



not modelled 85.7 18 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase, muscle type;
PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle
96c2yboA_



not modelled 85.6 15 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah
97c2h31A_



not modelled 85.5 13 PDB header:ligase, lyase
Chain: A: PDB Molecule:multifunctional protein ade2;
PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
98c2fp3A_



not modelled 85.3 19 PDB header:hydrolysis/apoptosis
Chain: A: PDB Molecule:caspase nc;
PDBTitle: crystal structure of the drosophila initiator caspase dronc
99d1mkza_



not modelled 85.1 18 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
100d1nbwb_



not modelled 84.8 21 Fold:Anticodon-binding domain-like
Superfamily:B12-dependent dehydatase associated subunit
Family:Dehydratase-reactivating factor beta subunit
101c3rfqC_



not modelled 84.7 22 PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
102d1di6a_



not modelled 84.2 19 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
103c2hqbA_



not modelled 84.2 11 PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator of comk gene;
PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
104d1ujna_



not modelled 83.8 14 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
105d1o1ya_



not modelled 83.7 22 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
106c3f2vA_



not modelled 83.3 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 14;
PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.
107d1xi8a3



not modelled 83.1 14 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
108d1r8ka_



not modelled 82.9 18 Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:PdxA-like
109d1t3ta2



not modelled 82.9 8 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
110c1rcuB_



not modelled 82.9 31 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein vt76;
PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76
111d1rcua_



not modelled 82.9 31 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
112c3o8oB_



not modelled 82.6 14 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase subunit beta;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
113d2pjua1



not modelled 82.6 15 Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
114d1vhqa_



not modelled 82.5 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
115c1zrsB_



not modelled 82.2 16 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: wild-type ld-carboxypeptidase
116d1g5qa_



not modelled 81.9 10 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
117c1sy7B_



not modelled 81.9 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase 1;
PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution.
118c3qjgD_



not modelled 81.6 19 PDB header:oxidoreductase
Chain: D: PDB Molecule:epidermin biosynthesis protein epid;
PDBTitle: epidermin biosynthesis protein epid from staphylococcus aureus
119d1qvwa_



not modelled 81.5 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
120d2g2ca1



not modelled 81.5 20 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0