Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77154
DateThu Jan 5 12:25:42 GMT 2012
Unique Job ID319f30da6dd9a874

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1h54B_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:maltose phosphorylase;
PDBTitle: maltose phosphorylase from lactobacillus brevis
Confidence and coverage
Confidence:100.0% Coverage: 94%
710 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTRPVTLSEPHFSQHTLNKYASLMAQGNGYLGLRASHEEDYTRQTRGMYLAGLYHRAGKG
Secondary structure 
SS confidence 
Disorder  ?????
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  EINELVNLPDVVGMEIAINGEVFSLSHEAWQRELDFASGELRRNVVWRTSNGSGYTIASR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  RFVSADQLPLIALEITITPLDADASVLISTGIDATQTNHGRQHLDETQVRVFGQHLMQGS
Secondary structure 
SS confidence 
Disorder 
??
??
??????
?????
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  YTTQDGRSDVAISCCCKVSGDVQQCYTAKERRLLQHTSAQLHAGETMTLQKLVWIDWRDD
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  RQAALDEWGSASLRQLEMCAQQSYDQLLAASTENWRQWWQKRRITVNGGEAHDQQALDYA
Secondary structure 
SS confidence 
Disorder 
?
?
????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LYHLRIMTPAHDERSSIAAKGLTGEGYKGHVFWDTEVFLLPFHLFSDPTVARSLLRYRWH
Secondary structure 
SS confidence 
Disorder 
?????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  NLPGAQEKARRNGWQGALFPWESARSGEEETPEFAAINIRTGLRQKVASAQAEHHLVADI
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  AWAVIQYWQTTGDESFIAHEGMALLLETAKFWISRAVRVNDRLEIHDVIGPDEYTEHVNN
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  NAYTSYMARYNVQQALNIARQFGCSDDAFIHRAEMFLKELWMPEIQPDGVLPQDDSFMAK
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  PAINLAKYKAAAGKQTILLDYSRAEVNEMQILKQADVVMLNYMLPEQFSAASCLANLQFY
Secondary structure 
SS confidence 
Disorder 
??????
?
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  EPRTIHDSSLSKAIHGIVAARCGLLTQSYQFWREGTEIDLGADPHSCDDGIHAAATGAIW
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  LGAIQGFAGVSVRDGELHLNPALPEQWQQLSFPLFWQGCELQVTLDAQRIAIRTSAPVSL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........730.........740.........750.....
Sequence  RLNGQLITVAEESVFCLGDFILPFNGTATKHQEDE
Secondary structure 
SS confidence 
Disorder 
?
?
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1h54 chain B

3D model

Region: 3 - 732
Aligned: 710
Modelled: 717
Confidence: 100.0%
Identity: 28%
PDB header:hydrolase
Chain: B: PDB Molecule:maltose phosphorylase;
PDBTitle: maltose phosphorylase from lactobacillus brevis

Phyre2

PDB 2rdy chain B

3D model

Region: 12 - 752
Aligned: 679
Modelled: 708
Confidence: 100.0%
Identity: 14%
PDB header:hydrolase
Chain: B: PDB Molecule:bh0842 protein;
PDBTitle: crystal structure of a putative glycoside hydrolase family2 protein from bacillus halodurans

Phyre2

PDB 2eac chain B

3D model

Region: 12 - 751
Aligned: 701
Modelled: 725
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-fucosidase;
PDBTitle: crystal structure of 1,2-a-l-fucosidase from2 bifidobacterium bifidum in complex with3 deoxyfuconojirimycin

Phyre2

PDB 1h54 chain A domain 1

3D model

Region: 244 - 732
Aligned: 471
Modelled: 476
Confidence: 100.0%
Identity: 32%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Glycosyltransferase family 36 C-terminal domain

Phyre2

PDB 1h54 chain A domain 2

3D model

Region: 3 - 241
Aligned: 238
Modelled: 239
Confidence: 100.0%
Identity: 23%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: Glycosyltransferase family 36 N-terminal domain

Phyre2

PDB 2cqt chain A

3D model

Region: 69 - 739
Aligned: 617
Modelled: 645
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:cellobiose phosphorylase;
PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate

Phyre2

PDB 1v7w chain A

3D model

Region: 102 - 727
Aligned: 573
Modelled: 596
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:chitobiose phosphorylase;
PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac

Phyre2

PDB 1v7w chain A domain 1

3D model

Region: 250 - 744
Aligned: 458
Modelled: 469
Confidence: 100.0%
Identity: 13%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Glycosyltransferase family 36 C-terminal domain

Phyre2

PDB 1ug9 chain A

3D model

Region: 65 - 520
Aligned: 391
Modelled: 407
Confidence: 99.7%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42

Phyre2

PDB 2okx chain B

3D model

Region: 417 - 735
Aligned: 292
Modelled: 298
Confidence: 99.7%
Identity: 15%
PDB header:hydrolase
Chain: B: PDB Molecule:rhamnosidase b;
PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a

Phyre2

PDB 3cih chain A

3D model

Region: 417 - 753
Aligned: 305
Modelled: 310
Confidence: 99.6%
Identity: 10%
PDB header:hydrolase
Chain: A: PDB Molecule:putative alpha-rhamnosidase;
PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron

Phyre2

PDB 1lf6 chain A

3D model

Region: 65 - 520
Aligned: 391
Modelled: 424
Confidence: 99.4%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of bacterial glucoamylase

Phyre2

PDB 3c67 chain B

3D model

Region: 70 - 669
Aligned: 555
Modelled: 584
Confidence: 99.1%
Identity: 11%
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ygjk;
PDBTitle: escherichia coli k12 ygjk in a complexed with glucose

Phyre2

PDB 1lf6 chain A domain 1

3D model

Region: 305 - 520
Aligned: 165
Modelled: 195
Confidence: 98.1%
Identity: 15%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Bacterial glucoamylase C-terminal domain-like

Phyre2

PDB 2ww1 chain B

3D model

Region: 207 - 365
Aligned: 145
Modelled: 150
Confidence: 97.6%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside

Phyre2

PDB 2zzr chain A

3D model

Region: 285 - 520
Aligned: 207
Modelled: 236
Confidence: 97.5%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:unsaturated glucuronyl hydrolase;
PDBTitle: crystal structure of unsaturated glucuronyl hydrolase from2 streptcoccus agalactiae

Phyre2

PDB 2jg0 chain A

3D model

Region: 324 - 668
Aligned: 295
Modelled: 318
Confidence: 97.5%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:periplasmic trehalase;
PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin

Phyre2

PDB 2jg0 chain A domain 1

3D model

Region: 324 - 668
Aligned: 295
Modelled: 318
Confidence: 97.5%
Identity: 15%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Trehalase-like

Phyre2

PDB 1ulv chain A domain 1

3D model

Region: 286 - 520
Aligned: 189
Modelled: 217
Confidence: 97.2%
Identity: 18%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Bacterial glucoamylase C-terminal domain-like

Phyre2

PDB 1ulv chain A domain 4

3D model

Region: 65 - 278
Aligned: 195
Modelled: 204
Confidence: 96.8%
Identity: 14%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: Bacterial glucoamylase N-terminal domain-like

Phyre2
1
c1h54B_
2
c2rdyB_
3
c2eacB_
4
d1h54a1
5
d1h54a2
6
c2cqtA_
7
c1v7wA_
8
d1v7wa1
9
c1ug9A_
10
c2okxB_
11
c3cihA_
12
c1lf6A_
13
c3c67B_
14
d1lf6a1
15
c2ww1B_
16
c2zzrA_
17
c2jg0A_
18
d2jg0a1
19
d1ulva1
20
d1ulva4
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1h54B_
100.0 28 PDB header:hydrolase
Chain: B: PDB Molecule:maltose phosphorylase;
PDBTitle: maltose phosphorylase from lactobacillus brevis
2c2rdyB_
100.0 14 PDB header:hydrolase
Chain: B: PDB Molecule:bh0842 protein;
PDBTitle: crystal structure of a putative glycoside hydrolase family2 protein from bacillus halodurans
3c2eacB_
100.0 15 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-fucosidase;
PDBTitle: crystal structure of 1,2-a-l-fucosidase from2 bifidobacterium bifidum in complex with3 deoxyfuconojirimycin
4d1h54a1
100.0 32 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyltransferase family 36 C-terminal domain
5d1h54a2
100.0 23 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Glycosyltransferase family 36 N-terminal domain
6c2cqtA_
100.0 14 PDB header:transferase
Chain: A: PDB Molecule:cellobiose phosphorylase;
PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate
7c1v7wA_
100.0 13 PDB header:transferase
Chain: A: PDB Molecule:chitobiose phosphorylase;
PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac
8d1v7wa1
100.0 13 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyltransferase family 36 C-terminal domain
9c1ug9A_
99.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
10c2okxB_
99.7 15 PDB header:hydrolase
Chain: B: PDB Molecule:rhamnosidase b;
PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a
11c3cihA_
99.6 10 PDB header:hydrolase
Chain: A: PDB Molecule:putative alpha-rhamnosidase;
PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron
12c1lf6A_
99.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of bacterial glucoamylase
13c3c67B_
99.1 11 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ygjk;
PDBTitle: escherichia coli k12 ygjk in a complexed with glucose
14d1lf6a1
98.1 15 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
15c2ww1B_
97.6 17 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside
16c2zzrA_
97.5 12 PDB header:hydrolase
Chain: A: PDB Molecule:unsaturated glucuronyl hydrolase;
PDBTitle: crystal structure of unsaturated glucuronyl hydrolase from2 streptcoccus agalactiae
17c2jg0A_
97.5 15 PDB header:hydrolase
Chain: A: PDB Molecule:periplasmic trehalase;
PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin
18d2jg0a1
97.5 15 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Trehalase-like
19d1ulva1
97.2 18 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
20d1ulva4
96.8 14 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
21d1lf6a2
not modelled 96.7 12 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
22d2d5ja1
not modelled 96.5 17 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyl Hydrolase Family 88
23c2vn4A_
not modelled 95.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: glycoside hydrolase family 15 glucoamylase from hypocrea2 jecorina
24c3qspB_
not modelled 94.6 17 PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: analysis of a new family of widely distributed metal-independent alpha2 mannosidases provides unique insight into the processing of n-linked3 glycans, streptococcus pneumoniae sp_2144 non-productive substrate4 complex with alpha-1,6-mannobiose
25d2fbaa1
not modelled 93.1 17 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glucoamylase
26c2z07A_
not modelled 93.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ttha0978;
PDBTitle: crystal structure of uncharacterized conserved protein from2 thermus thermophilus hb8
27c2wvyA_
not modelled 92.5 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt21992 from bacteroides thetaiotaomicron vpi-5482
28d1gaia_
not modelled 87.4 17 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glucoamylase
29c2p0vA_
not modelled 78.2 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein bt3781;
PDBTitle: crystal structure of bt3781 protein from bacteroides2 thetaiotaomicron, northeast structural genomics target3 btr58
30d2p0va1
not modelled 78.2 19 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
31d2nvpa1
not modelled 70.2 16 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
32c3gt5A_
not modelled 31.3 8 PDB header:isomerase
Chain: A: PDB Molecule:n-acetylglucosamine 2-epimerase;
PDBTitle: crystal structure of an n-acetylglucosamine 2-epimerase family protein2 from xylella fastidiosa
33c3d82A_
not modelled 22.6 14 PDB header:metal binding protein
Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution
34c2ky8A_
not modelled 22.2 35 PDB header:transcription/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2;
PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence
35c3nuqA_
not modelled 17.2 17 PDB header:hydrolase
Chain: A: PDB Molecule:putative nucleotide phosphatase;
PDBTitle: structure of a putative nucleotide phosphatase from saccharomyces2 cerevisiae
36d2pyta1
not modelled 16.4 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:EutQ-like
37c3lwcA_
not modelled 15.9 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution
38d1ig4a_
not modelled 15.2 26 Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
39d1fp3a_
not modelled 14.9 13 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:N-acylglucosamine (NAG) epimerase
40d2e45a1
not modelled 14.6 20 Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
41c2avpA_
not modelled 13.8 14 PDB header:de novo protein
Chain: A: PDB Molecule:synthetic consensus tpr protein;
PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix
42c1na3A_
not modelled 12.5 15 PDB header:de novo protein
Chain: A: PDB Molecule:designed protein ctpr2;
PDBTitle: design of stable alpha-helical arrays from an idealized tpr2 motif
43d1blaa_
not modelled 12.4 24 Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
44c2gz6B_
not modelled 11.7 13 PDB header:isomerase
Chain: B: PDB Molecule:n-acetyl-d-glucosamine 2-epimerase;
PDBTitle: crystal structure of anabaena sp. ch1 n-acetyl-d-glucosamine 2-2 epimerase at 2.0 a
45c3fjsC_
not modelled 11.1 17 PDB header:biosynthetic protein
Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold;
PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution
46d1ok0a_
not modelled 10.8 40 Fold:alpha-Amylase inhibitor tendamistat
Superfamily:alpha-Amylase inhibitor tendamistat
Family:alpha-Amylase inhibitor tendamistat
47d2ysca1
not modelled 10.6 33 Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
48c2ov2O_
not modelled 9.9 75 PDB header:protein binding/transferase
Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4;
PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4)
49d1sfua_
not modelled 9.3 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
50c3ecqA_
not modelled 9.2 29 PDB header:hydrolase
Chain: A: PDB Molecule:endo-alpha-n-acetylgalactosaminidase;
PDBTitle: endo-alpha-n-acetylgalactosaminidase from streptococcus pneumoniae:2 semet structure
51d1tueb_
not modelled 9.0 12 Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
52d3d37a1
not modelled 8.5 6 Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
53c2vt8B_
not modelled 8.1 24 PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:proteasome inhibitor pi31 subunit;
PDBTitle: structure of a conserved dimerisation domain within fbox72 and pi31
54c1wr4A_
not modelled 7.8 36 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2;
PDBTitle: solution structure of the second ww domain of nedd4-2
55d1qk9a_
not modelled 7.5 50 Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
56d2fug33
not modelled 7.5 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
57d1ub1a_
not modelled 7.1 32 Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
58c2k85A_
not modelled 7.0 15 PDB header:protein binding
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: p190-a rhogap ff1 domain
59c2kywA_
not modelled 7.0 9 PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion exoprotein;
PDBTitle: solution nmr structure of a domain of adhesion exoprotein from2 pediococcus pentosaceus, northeast structural genomics consortium3 target ptr41o
60c3k7xA_
not modelled 6.8 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0763 protein;
PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23.
61d1tjca_
not modelled 6.6 14 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
62d2ho2a1
not modelled 6.6 33 Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
63d1kwga1
not modelled 6.5 11 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
64c2odbB_
not modelled 6.4 63 PDB header:protein binding
Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6;
PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6)
65c2zxqA_
not modelled 6.4 22 PDB header:hydrolase
Chain: A: PDB Molecule:endo-alpha-n-acetylgalactosaminidase;
PDBTitle: crystal structure of endo-alpha-n-acetylgalactosaminidase2 from bifidobacterium longum (engbf)
66d2arca_
not modelled 6.1 3 Fold:Double-stranded beta-helix
Superfamily:Regulatory protein AraC
Family:Regulatory protein AraC
67c1e0aB_
not modelled 5.7 63 PDB header:signalling protein
Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha;
PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase
68c3mpbA_
not modelled 5.6 10 PDB header:isomerase
Chain: A: PDB Molecule:sugar isomerase;
PDBTitle: z5688 from e. coli o157:h7 bound to fructose
69c3j08A_
not modelled 5.6 20 PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
70c2v8kA_
not modelled 5.6 13 PDB header:lyase
Chain: A: PDB Molecule:pectate lyase;
PDBTitle: structure of a family 2 pectate lyase in complex with2 trigalacturonic acid
71d1qqha_
not modelled 5.4 12 Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
72d1xuba2
not modelled 5.2 9 Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PhzC/PhzF-like
73d2gj4a1
not modelled 5.2 26 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
74c2vc8A_
not modelled 5.2 18 PDB header:protein-binding
Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of the lsm domain of human edc3 (enhancer2 of decapping 3)
75d1p9ka_
not modelled 5.2 12 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:YbcJ-like
76c2hc8A_
not modelled 5.1 21 PDB header:transport protein
Chain: A: PDB Molecule:cation-transporting atpase, p-type;
PDBTitle: structure of the a. fulgidus copa a-domain
77c2hyzA_
not modelled 5.1 15 PDB header:de novo protein
Chain: A: PDB Molecule:synthetic consensus tpr protein;
PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix2 (orthorombic crystal form)
78d2atia1
not modelled 5.1 26 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
79d1ljma_
not modelled 5.0 19 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:RUNT domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0