PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3d82A_

Fold library id	PDB Header	Molecule	Title
c3d82A_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: cupin 2, conserved barrel domain protein;	PDBTitle: crystal structure of domain of unknown function with a2 cupin fold (yp_752209.1) from shewanella frigidimarina3 ncimb 400 at 2.05 a resolution

Links to external resources
Added to library: Tue Mar 16 12:53:08 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G X Q T K V I N F N D K F S L F N Q H W S P R V I A E X N D Y Q F K L V K V E G E F V W H E H A D T D E V F I V X E G T L Q I A F R D Q N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
T
S S
T T
B
T T
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . .

Sequence T L Q A G E X Y V I P K G V E H K P X A K E E C K I X I I E P R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	X	Q	T	K	V	I	N	F	N	D	K	F	S	L	F	N	Q	H	W	S	P	R	V	I	A	E	X	N	D	Y	Q	F	K	L	V	K	V	E	G	E	F	V	W	H	E	H	A	D	T	D	E	V	F	I	V	X	E	G	T	L	Q	I	A	F	R	D	Q	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	G										T				S	S									T	T															B			T	T										S							S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Sequence	T	L	Q	A	G	E	X	Y	V	I	P	K	G	V	E	H	K	P	X	A	K	E	E	C	K	I	X	I	I	E	P	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T							T	T			B