Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ47083
DateThu Jan 5 12:36:11 GMT 2012
Unique Job ID2bd14d52da65284f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3fzjC_
Top template information
PDB header:transcription regulator
Chain: C: PDB Molecule:lysr type regulator of tsambcd;
PDBTitle: tsar low resolution crystal structure, tetragonal form
Confidence and coverage
Confidence:100.0% Coverage: 93%
293 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMT
Secondary structure 


















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Disorder  ??






















































?

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   .........70.........80.........90.........100.........110.........120
Sequence  EPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFP
Secondary structure 









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Disorder 

























??????



























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   .........130.........140.........150.........160.........170.........180
Sequence  EVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQ
Secondary structure 



























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Disorder 






























?


























?
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   .........190.........200.........210.........220.........230.........240
Sequence  ISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGI
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Disorder  ??

?






















































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   .........250.........260.........270.........280.........290.........300
Sequence  GLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDI
Secondary structure 




















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Disorder 






????
















































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   .........310......
Sequence  KRQVMESSEEEIDYQI
Secondary structure 







SS confidence 















Disorder 


?????????????
Disorder confidence 















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3fzj chain C

3D model

Region: 1 - 295
Aligned: 293
Modelled: 295
Confidence: 100.0%
Identity: 16%
PDB header:transcription regulator
Chain: C: PDB Molecule:lysr type regulator of tsambcd;
PDBTitle: tsar low resolution crystal structure, tetragonal form

Phyre2

PDB 3hhg chain F

3D model

Region: 1 - 295
Aligned: 289
Modelled: 295
Confidence: 100.0%
Identity: 18%
PDB header:transcription regulator
Chain: F: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis.

Phyre2

PDB 1iz1 chain B

3D model

Region: 1 - 296
Aligned: 291
Modelled: 296
Confidence: 100.0%
Identity: 20%
PDB header:dna binding protein
Chain: B: PDB Molecule:lysr-type regulatory protein;
PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator

Phyre2

PDB 3t1b chain B

3D model

Region: 1 - 295
Aligned: 287
Modelled: 295
Confidence: 100.0%
Identity: 16%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: crystal structure of the full-length aphb n100e variant

Phyre2

PDB 2esn chain C

3D model

Region: 1 - 293
Aligned: 286
Modelled: 293
Confidence: 100.0%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of probable transcriptional regulator pa04772 from pseudomonas aeruginosa

Phyre2

PDB 3fzv chain C

3D model

Region: 1 - 295
Aligned: 280
Modelled: 295
Confidence: 100.0%
Identity: 19%
PDB header:transcription regulator
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa

Phyre2

PDB 3isp chain A

3D model

Region: 1 - 297
Aligned: 283
Modelled: 297
Confidence: 100.0%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator
PDBTitle: crystal structure of argp from mycobacterium tuberculosis

Phyre2

PDB 1b9n chain A

3D model

Region: 1 - 180
Aligned: 170
Modelled: 180
Confidence: 99.9%
Identity: 11%
PDB header:transcription
Chain: A: PDB Molecule:protein (mode);
PDBTitle: regulator from escherichia coli

Phyre2

PDB 2fyi chain A domain 1

3D model

Region: 88 - 307
Aligned: 220
Modelled: 220
Confidence: 99.9%
Identity: 100%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2

PDB 3m1e chain A

3D model

Region: 1 - 89
Aligned: 87
Modelled: 89
Confidence: 99.9%
Identity: 24%
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of benm_dbd

Phyre2

PDB 1al3 chain A

3D model

Region: 92 - 313
Aligned: 222
Modelled: 222
Confidence: 99.9%
Identity: 41%
PDB header:transcription regulation
Chain: A: PDB Molecule:cys regulon transcriptional activator cysb;
PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes

Phyre2

PDB 1al3 chain A

3D model

Region: 92 - 313
Aligned: 222
Modelled: 222
Confidence: 99.9%
Identity: 41%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2

PDB 2esn chain A domain 1

3D model

Region: 1 - 85
Aligned: 83
Modelled: 85
Confidence: 99.9%
Identity: 19%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: LysR-like transcriptional regulators

Phyre2

PDB 1b9m chain A domain 1

3D model

Region: 1 - 106
Aligned: 104
Modelled: 106
Confidence: 99.9%
Identity: 11%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: N-terminal domain of molybdate-dependent transcriptional regulator ModE

Phyre2

PDB 2hxr chain A

3D model

Region: 94 - 296
Aligned: 200
Modelled: 203
Confidence: 99.9%
Identity: 21%
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator cynr;
PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism

Phyre2

PDB 1ixc chain A domain 1

3D model

Region: 1 - 90
Aligned: 83
Modelled: 89
Confidence: 99.8%
Identity: 29%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: LysR-like transcriptional regulators

Phyre2

PDB 3jv9 chain B

3D model

Region: 92 - 296
Aligned: 197
Modelled: 205
Confidence: 99.8%
Identity: 18%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: the structure of a reduced form of oxyr from n. meningitidis

Phyre2

PDB 1i6a chain A

3D model

Region: 89 - 297
Aligned: 208
Modelled: 209
Confidence: 99.8%
Identity: 21%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2

PDB 3ho7 chain A

3D model

Region: 92 - 298
Aligned: 206
Modelled: 207
Confidence: 99.8%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:oxyr;
PDBTitle: crystal structure of oxyr from porphyromonas gingivalis

Phyre2

PDB 1uth chain A

3D model

Region: 89 - 297
Aligned: 207
Modelled: 209
Confidence: 99.8%
Identity: 14%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2
1

c3fzjC_
2

c3hhgF_
3

c1iz1B_
4

c3t1bB_
5

c2esnC_
6

c3fzvC_
7

c3ispA_
8

c1b9nA_
9

d2fyia1
10

c3m1eA_
11

c1al3A_
12

d1al3a_
13

d2esna1
14

d1b9ma1
15

c2hxrA_
16

d1ixca1
17

c3jv9B_
18

d1i6aa_
19

c3ho7A_
20

d1utha_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fzjC_



100.0 16 PDB header:transcription regulator
Chain: C: PDB Molecule:lysr type regulator of tsambcd;
PDBTitle: tsar low resolution crystal structure, tetragonal form
2c3hhgF_



100.0 18 PDB header:transcription regulator
Chain: F: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis.
3c1iz1B_



100.0 20 PDB header:dna binding protein
Chain: B: PDB Molecule:lysr-type regulatory protein;
PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator
4c3t1bB_



100.0 16 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: crystal structure of the full-length aphb n100e variant
5c2esnC_



100.0 18 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of probable transcriptional regulator pa04772 from pseudomonas aeruginosa
6c3fzvC_



100.0 19 PDB header:transcription regulator
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa
7c3ispA_



100.0 17 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator
PDBTitle: crystal structure of argp from mycobacterium tuberculosis
8c1b9nA_



99.9 11 PDB header:transcription
Chain: A: PDB Molecule:protein (mode);
PDBTitle: regulator from escherichia coli
9d2fyia1



99.9 100 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
10c3m1eA_



99.9 24 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of benm_dbd
11c1al3A_



99.9 41 PDB header:transcription regulation
Chain: A: PDB Molecule:cys regulon transcriptional activator cysb;
PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes
12d1al3a_



99.9 41 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
13d2esna1



99.9 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LysR-like transcriptional regulators
14d1b9ma1



99.9 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:N-terminal domain of molybdate-dependent transcriptional regulator ModE
15c2hxrA_



99.9 21 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator cynr;
PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism
16d1ixca1



99.8 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LysR-like transcriptional regulators
17c3jv9B_



99.8 18 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: the structure of a reduced form of oxyr from n. meningitidis
18d1i6aa_



99.8 21 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
19c3ho7A_



99.8 17 PDB header:transcription
Chain: A: PDB Molecule:oxyr;
PDBTitle: crystal structure of oxyr from porphyromonas gingivalis
20d1utha_



99.8 14 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
21c3oxnD_



not modelled 99.8 16 PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator, lysr family;
PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus
22c2ql3G_



not modelled 99.8 15 PDB header:transcription
Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein;
PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1
23c2ijlB_



not modelled 99.7 10 PDB header:transcription
Chain: B: PDB Molecule:molybdenum-binding transcriptional repressor;
PDBTitle: the structure of a putative mode from agrobacterium tumefaciens.
24c2uyeA_



not modelled 99.7 13 PDB header:transcription
Chain: A: PDB Molecule:regulatory protein;
PDBTitle: double mutant y110s,f111v dntr from burkholderia sp. strain2 dnt in complex with thiocyanate
25d1ixca2



not modelled 99.7 16 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
26c2h9qC_



not modelled 99.7 19 PDB header:transcription
Chain: C: PDB Molecule:hth-type transcriptional regulator catm;
PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h)
27c3n6uA_



not modelled 99.7 11 PDB header:transcription regulator
Chain: A: PDB Molecule:lysr type regulator of tsambcd;
PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate
28c2f7cA_



not modelled 99.7 19 PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator catm;
PDBTitle: catm effector binding domain with its effector cis,cis-muconate
29c3kosA_



not modelled 99.7 14 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional activator ampr;
PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii
30c3fd3A_



not modelled 99.7 10 PDB header:transcription regulator
Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein;
PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58.
31d2esna2



not modelled 99.7 13 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
32c3hhfB_



not modelled 99.7 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga regulatory domain, a lysr-type transcriptional2 regulator from neisseria meningitidis.
33c2h9bB_



not modelled 99.7 16 PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s)
34c2f78A_



not modelled 99.7 14 PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: benm effector binding domain with its effector benzoate
35c3mz1D_



not modelled 99.6 11 PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a possible transcription regulator protein2 from sinorhizobium meliloti 1021
36c2qsxB_



not modelled 99.4 15 PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional regulator, lysr family;
PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus
37c3onmB_



not modelled 99.3 17 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator lrha;
PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis
38c1f5tA_



not modelled 98.0 23 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
39d2fxaa1



not modelled 98.0 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
40c2h09A_



not modelled 98.0 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
41c2x4hA_



not modelled 98.0 15 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
42c3hruA_



not modelled 98.0 18 PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
43c1fx7C_



not modelled 98.0 23 PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
44c3boqB_



not modelled 97.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi
45c1g3wA_



not modelled 97.9 23 PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
46c2it0A_



not modelled 97.9 23 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
47d2hr3a1



not modelled 97.9 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
48c3f3xA_



not modelled 97.9 20 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of the transcriptional regulator bldr2 from sulfolobus solfataricus
49c3ctaA_



not modelled 97.8 31 PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase;
PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum
50c2gxgA_



not modelled 97.7 22 PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
51c3nrvC_



not modelled 97.7 21 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
52c3cjnA_



not modelled 97.7 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi
53c2fxaB_



not modelled 97.7 17 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
54c3cdhB_



not modelled 97.7 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3
55d1lj9a_



not modelled 97.6 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
56c3fm5D_



not modelled 97.6 25 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1
57c3g3zA_



not modelled 97.6 24 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
58c3e6mD_



not modelled 97.6 18 PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
59c3kp3B_



not modelled 97.6 14 PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin
60d1lnwa_



not modelled 97.5 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
61d2fbha1



not modelled 97.5 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
62c3nqoB_



not modelled 97.5 18 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
63c2fa5B_



not modelled 97.4 18 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
64c3bjaA_



not modelled 97.4 12 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
65c2rdpA_



not modelled 97.4 11 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
66c2nnnB_



not modelled 97.4 12 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
67d2bv6a1



not modelled 97.4 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
68d3broa1



not modelled 97.4 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
69d1s3ja_



not modelled 97.4 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
70d1jgsa_



not modelled 97.3 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
71c3bpxB_



not modelled 97.3 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of marr
72c2nyxB_



not modelled 97.3 17 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
73c3hrmA_



not modelled 97.3 18 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator sarz;
PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form
74c3k0lA_



not modelled 97.3 12 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
75c2ev5B_



not modelled 97.2 16 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
76d2frha1



not modelled 97.2 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
77d2a61a1



not modelled 97.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
78c3oopA_



not modelled 97.2 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2960 protein;
PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
79d2etha1



not modelled 97.1 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
80d2fbia1



not modelled 97.1 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
81c2pexA_



not modelled 97.1 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator ohrr;
PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris
82d1p4xa1



not modelled 97.0 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
83d1p4xa2



not modelled 97.0 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
84c3deuB_



not modelled 97.0 18 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator slya;
PDBTitle: crystal structure of transcription regulatory protein slya2 from salmonella typhimurium in complex with salicylate3 ligands
85c2oqgA_



not modelled 97.0 18 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
86d3deua1



not modelled 97.0 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
87c2qwwB_



not modelled 96.9 12 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
88c3ecoB_



not modelled 96.9 21 PDB header:transcription
Chain: B: PDB Molecule:mepr;
PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa
89d1hsja1



not modelled 96.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
90d1ub9a_



not modelled 96.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
91c3bj6B_



not modelled 96.9 14 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
92c3onqB_



not modelled 96.8 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:regulator of polyketide synthase expression;
PDBTitle: crystal structure of regulator of polyketide synthase expression2 bad_0249 from bifidobacterium adolescentis
93d1z91a1



not modelled 96.8 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
94c3s2wB_



not modelled 96.8 19 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1
95d2fbka1



not modelled 96.8 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
96d1twya_



not modelled 96.7 14 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
97c3tgnA_



not modelled 96.6 14 PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
98d2f2ea1



not modelled 96.6 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
99c1r22B_



not modelled 96.5 18 PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
100c1twyG_



not modelled 96.5 16 PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:abc transporter, periplasmic substrate-binding protein;
PDBTitle: crystal structure of an abc-type phosphate transport receptor from2 vibrio cholerae
101d3ctaa1



not modelled 96.5 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
102c3jw4C_



not modelled 96.5 18 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, marr/emrr family;
PDBTitle: the structure of a putative marr family transcriptional regulator from2 clostridium acetobutylicum
103c2kkoB_



not modelled 96.4 21 PDB header:dna binding protein
Chain: B: PDB Molecule:possible transcriptional regulatory protein
PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
104c3f6oB_



not modelled 96.4 12 PDB header:transcription regulator
Chain: B: PDB Molecule:probable transcriptional regulator, arsr family
PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
105d1z7ua1



not modelled 96.3 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
106c3f6vA_



not modelled 96.3 14 PDB header:transcription regulator
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family
PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance
107c2zkzC_



not modelled 96.2 27 PDB header:transcription
Chain: C: PDB Molecule:transcriptional repressor pagr;
PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis
108c1p4xA_



not modelled 96.2 17 PDB header:transcription
Chain: A: PDB Molecule:staphylococcal accessory regulator a homologue;
PDBTitle: crystal structure of sars protein from staphylococcus aureus
109c2wteB_



not modelled 96.1 18 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
110c3jthA_



not modelled 96.0 29 PDB header:transcription
Chain: A: PDB Molecule:transcription activator hlyu;
PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6
111c2cg4B_



not modelled 95.9 9 PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
112d1r1ua_



not modelled 95.9 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
113d1r7ja_



not modelled 95.9 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Archaeal DNA-binding protein
114c3cuoB_



not modelled 95.8 21 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
115d1r1ta_



not modelled 95.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
116c4a5mH_



not modelled 95.7 19 PDB header:transcription
Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr;
PDBTitle: redox regulator hypr in its oxidized form
117c3df8A_



not modelled 95.7 23 PDB header:transcription
Chain: A: PDB Molecule:possible hxlr family transcriptional factor;
PDBTitle: the crystal structure of a possible hxlr family transcriptional factor2 from thermoplasma volcanium gss1
118c2ewnA_



not modelled 95.7 24 PDB header:ligase, transcription
Chain: A: PDB Molecule:bira bifunctional protein;
PDBTitle: ecoli biotin repressor with co-repressor analog
119d1u2wa1



not modelled 95.7 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
120d1g2ha_



not modelled 95.7 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0