PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1p4xA_

Fold library id	PDB Header	Molecule	Title
c1p4xA_	PDB header: transcription	Chain: A: PDB Molecule: staphylococcal accessory regulator a homologue;	PDBTitle: crystal structure of sars protein from staphylococcus aureus

Links to external resources
Added to library: Tue Mar 16 12:32:31 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K Y N N H D K I R D F I I I E A Y M F R F K K K V K P E V D M T I K E F I L L T Y L F H Q Q E N T L P F K K I V S D L C Y K Q S D L V Q H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T
S S
S
S
S S S S
G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I K V L V K H S Y I S K V R S K I D E R N T Y I S I S E E Q R E K I A E R V T L F D Q I I K Q F N L A D Q S E S Q M I P K D S K E F L N L M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S S T T S
T T
S S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M Y T M Y F K N I I K K H L T L S F V E F T I L A I I T S Q N K N I V L L K D L I E T I H H K Y P Q T V R A L N N L K K Q G Y L I K E R S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T
S S S
T S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence E D E R K I L I H M D D A Q Q D H A E Q L L A Q V N Q L L A D K D H L H L V F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T
T S S S
G G G S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	Y	N	N	H	D	K	I	R	D	F	I	I	I	E	A	Y	M	F	R	F	K	K	K	V	K	P	E	V	D	M	T	I	K	E	F	I	L	L	T	Y	L	F	H	Q	Q	E	N	T	L	P	F	K	K	I	V	S	D	L	C	Y	K	Q	S	D	L	V	Q	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S																				T	T	T		S	S													S		S		S											S	S	S		G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	K	V	L	V	K	H	S	Y	I	S	K	V	R	S	K	I	D	E	R	N	T	Y	I	S	I	S	E	E	Q	R	E	K	I	A	E	R	V	T	L	F	D	Q	I	I	K	Q	F	N	L	A	D	Q	S	E	S	Q	M	I	P	K	D	S	K	E	F	L	N	L	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S							S	S	S	T	T	S																															T	T			S	S		S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	Y	T	M	Y	F	K	N	I	I	K	K	H	L	T	L	S	F	V	E	F	T	I	L	A	I	I	T	S	Q	N	K	N	I	V	L	L	K	D	L	I	E	T	I	H	H	K	Y	P	Q	T	V	R	A	L	N	N	L	K	K	Q	G	Y	L	I	K	E	R	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S													T	T	T	T												S	S	S																T	S	S						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	E	D	E	R	K	I	L	I	H	M	D	D	A	Q	Q	D	H	A	E	Q	L	L	A	Q	V	N	Q	L	L	A	D	K	D	H	L	H	L	V	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	T	T																									T	S	S	S		G	G	G	S	S