Email l.a.kelley@imperial.ac.uk Description P25550 Date Thu Jan 5 11:42:07 GMT 2012 Unique Job ID 1088ea979fa58538

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1tv8a_ 100.0 17 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:MoCo biosynthesis proteins 2 c2yx0A_ 99.9 17 PDB header:metal binding protein Chain: A: PDB Molecule:radical sam enzyme; PDBTitle: crystal structure of p. horikoshii tyw1 3 c3c8fA_ 99.8 21 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet 4 d1olta_ 99.7 12 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 5 c2a5hC_ 99.6 15 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 6 c2z2uA_ 99.6 17 PDB header:metal binding protein Chain: A: PDB Molecule:upf0026 protein mj0257; PDBTitle: crystal structure of archaeal tyw1 7 c3canA_ 99.5 17 PDB header:lyase activator Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme; PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482 8 c3t7vA_ 99.5 8 PDB header:transferase Chain: A: PDB Molecule:methylornithine synthase pylb; PDBTitle: crystal structure of methylornithine synthase (pylb) 9 c3cixA_ 99.4 13 PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate 10 c3rfaA_ 99.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine 11 d1r30a_ 99.4 13 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Biotin synthase 12 c1r30A_ 99.4 13 PDB header:transferase Chain: A: PDB Molecule:biotin synthase; PDBTitle: the crystal structure of biotin synthase, an s-2 adenosylmethionine-dependent radical enzyme 13 c2qgqF_ 98.6 8 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 14 c3ivuB_ 94.5 10 PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og 15 c3bleA_ 94.5 12 PDB header:transferase Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans; PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate 16 c3ewbX_ 93.2 11 PDB header:transferase Chain: X: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of n-terminal domain of putative 2-2 isopropylmalate synthase from listeria monocytogenes 17 c2ftpA_ 91.4 10 PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa 18 c2cw6B_ 86.2 8 PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria 19 c1ydoC_ 76.3 11 PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. 20 c3eegB_ 76.2 8 PDB header:transferase Chain: B: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii 21 c1ydnA_ not modelled 70.1 10 PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35. 22 c2knpA_ not modelled 49.8 36 PDB header:unknown function Chain: A: PDB Molecule:mcocc-1; PDBTitle: isolation and characterization of peptides from momordica2 cochinchinensis seeds. 23 c2qv5A_ not modelled 48.1 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 24 c2wanA_ not modelled 43.1 17 PDB header:hydrolase Chain: A: PDB Molecule:pullulanase; PDBTitle: pullulanase from bacillus acidopullulyticus 25 d1qwga_ not modelled 39.4 15 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 26 c1ehaA_ not modelled 39.1 22 PDB header:hydrolase Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase; PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus 27 d1gjwa2 not modelled 38.9 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 28 c1bf2A_ not modelled 38.2 18 PDB header:hydrolase Chain: A: PDB Molecule:isoamylase; PDBTitle: structure of pseudomonas isoamylase 29 c3k1dA_ not modelled 36.3 22 PDB header:transferase Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme; PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv 30 c3m07A_ not modelled 36.1 25 PDB header:unknown function Chain: A: PDB Molecule:putative alpha amylase; PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium. 31 c2by0A_ not modelled 35.6 24 PDB header:hydrolase Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase; PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection 32 d1dd9a_ not modelled 34.6 11 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 33 c1dd9A_ not modelled 34.6 11 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 34 c1m7xC_ not modelled 33.8 20 PDB header:transferase Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme; PDBTitle: the x-ray crystallographic structure of branching enzyme 35 c1nvmG_ not modelled 33.5 10 PDB header:lyase/oxidoreductase Chain: G: PDB Molecule:4-hydroxy-2-oxovalerate aldolase; PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate 36 d2nlya1 not modelled 29.9 10 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase 37 c2vncB_ not modelled 29.8 17 PDB header:hydrolase Chain: B: PDB Molecule:glycogen operon protein glgx; PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus 38 c3ol0C_ not modelled 25.4 19 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 39 c1gjuA_ not modelled 23.5 14 PDB header:transferase Chain: A: PDB Molecule:maltodextrin glycosyltransferase; PDBTitle: maltosyltransferase from thermotoga maritima 40 d2d3na2 not modelled 22.6 9 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 41 c2dh3A_ not modelled 22.2 18 PDB header:transport protein, signaling protein Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain; PDBTitle: crystal structure of human ed-4f2hc 42 c2vefB_ not modelled 22.1 13 PDB header:transferase Chain: B: PDB Molecule:dihydropteroate synthase; PDBTitle: dihydropteroate synthase from streptococcus pneumoniae 43 d1e43a2 not modelled 21.6 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 44 d1qt1a_ not modelled 20.3 11 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 45 c2au3A_ not modelled 20.3 21 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) 46 d1m7xa3 not modelled 20.1 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 47 c1x3lA_ not modelled 19.9 19 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph0495; PDBTitle: crystal structure of the ph0495 protein from pyrococccus horikoshii2 ot3 48 d2gjpa2 not modelled 19.8 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 49 d1ob0a2 not modelled 19.7 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 50 d1uwva2 not modelled 19.6 45 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:(Uracil-5-)-methyltransferase 51 d2aaaa2 not modelled 19.3 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 52 c3amlA_ not modelled 19.0 14 PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l 53 c3dz1A_ not modelled 18.8 14 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution 54 d2fcja1 not modelled 18.8 18 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 55 d1ps9a1 not modelled 18.6 14 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 56 d1bf2a3 not modelled 18.5 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 57 d1z6ma1 not modelled 18.4 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 58 d1v93a_ not modelled 18.4 14 Fold:TIM beta/alpha-barrel Superfamily:FAD-linked oxidoreductase Family:Methylenetetrahydrofolate reductase 59 c1hvxA_ not modelled 18.3 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: bacillus stearothermophilus alpha-amylase 60 c3amkA_ not modelled 17.7 12 PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l 61 d1m53a2 not modelled 17.3 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 62 c1uwvA_ not modelled 16.7 50 PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase 63 d2guya2 not modelled 16.5 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 64 c2gdvA_ not modelled 15.9 7 PDB header:transferase Chain: A: PDB Molecule:sucrose phosphorylase; PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose 65 c3aerB_ not modelled 15.9 19 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 66 c1zjaB_ not modelled 15.8 15 PDB header:isomerase Chain: B: PDB Molecule:trehalulose synthase; PDBTitle: crystal structure of the trehalulose synthase mutb from2 pseudomonas mesoacidophila mx-45 (triclinic form) 67 c1e40A_ not modelled 15.5 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a 68 c2taaA_ not modelled 15.0 15 PDB header:hydrolase (o-glycosyl) Chain: A: PDB Molecule:taka-amylase a; PDBTitle: structure and possible catalytic residues of taka-amylase a 69 c1m53A_ not modelled 15.0 10 PDB header:isomerase Chain: A: PDB Molecule:isomaltulose synthase; PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3 70 c3a47A_ not modelled 14.6 15 PDB header:hydrolase Chain: A: PDB Molecule:oligo-1,6-glucosidase; PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae 71 d2b8na1 not modelled 14.4 16 Fold:GckA/TtuD-like Superfamily:GckA/TtuD-like Family:GckA/TtuD-like 72 c2ze0A_ not modelled 14.3 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: alpha-glucosidase gsj 73 d1r7aa2 not modelled 13.9 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 74 c3lwdA_ not modelled 13.7 13 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution 75 d1eh9a3 not modelled 13.7 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 76 d2a6na1 not modelled 13.4 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 77 d1qhoa4 not modelled 13.1 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 78 c2g7zB_ not modelled 12.9 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein spy1493; PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids 79 c1jdaA_ not modelled 12.8 6 PDB header:hydrolase Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase; PDBTitle: maltotetraose-forming exo-amylase 80 c2r8wB_ not modelled 12.7 17 PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 81 d2aeua1 not modelled 12.5 6 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SelA-like 82 d1o98a1 not modelled 12.5 8 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 83 c1lwhA_ not modelled 12.4 17 PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase 84 c3p6lA_ not modelled 12.3 10 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 85 c3lciA_ not modelled 12.0 15 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 86 d2bhua3 not modelled 12.0 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 87 c2aaaA_ not modelled 11.9 15 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus 88 c1rrqA_ not modelled 11.7 18 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 89 c1uokA_ not modelled 11.5 12 PDB header:glucosidase Chain: A: PDB Molecule:oligo-1,6-glucosidase; PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase 90 c3faxA_ not modelled 11.4 24 PDB header:hydrolase Chain: A: PDB Molecule:reticulocyte binding protein; PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose 91 d1hvxa2 not modelled 11.4 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 92 c2p0oA_ not modelled 11.4 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf871; PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function 93 c3czkA_ not modelled 11.1 13 PDB header:hydrolase Chain: A: PDB Molecule:sucrose hydrolase; PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex 94 d1g5aa2 not modelled 11.1 6 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 95 c2fhfA_ not modelled 11.1 28 PDB header:hydrolase Chain: A: PDB Molecule:pullulanase; PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose 96 c2vs1A_ not modelled 11.0 27 PDB header:transferase Chain: A: PDB Molecule:uncharacterized rna methyltransferase pyrab10780; PDBTitle: the crystal structure of pyrococcus abyssi trna (uracil-54,2 c5)-methyltransferase in complex with s-adenosyl-l-3 homocysteine 97 c3b4uB_ not modelled 10.9 15 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 98 c3e96B_ not modelled 10.9 13 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii 99 d1t6t1_ not modelled 10.9 16 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain